clinical-fusion

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Hi, Thank you for the nice work. Can you please share adm_details.csv, pivoted-lab.csv and pivoted-vital.csv files? The sql files are in the query folder but I need the csv files...

Zeros12

Confusion for the process of redo the prediction

1

I already have the data extract and place them in the data folder includes: `adm_details.csv pivoted_lab.csv pivoted_vital.csv` and I suppose I need to run the following code: `$ python 00_define_cohort.py...

CalendulaED

When I run the line `python 02_extract_notes.py` it shows the following warnings and I think this might affect the rest of the code: `Reading data... sys:1: DtypeWarning: Columns (5) have...

CalendulaED

Errors during training phase, RuntimeError: you must first build vocabulary before training the model

1

I have successfully run the first five python file for preprocessing including: `$ python 00_define_cohort.py # define patient cohort and collect labels $ python 01_get_signals.py # extract temporal signals (vital...

CalendulaED

unstructure_dict

2

Hi, I'm trying to run your code and cannot find the 'unstructure_dict.json' file . How is it generated? thanks,

nataligafni