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Add labels support for import

Open will-moore opened this issue 7 months ago • 1 comments

This reverts commit 9fea2450cbd3646d0cbc599dfe366c266d51e6f3.

To test:

  • with a bioformats2raw image (2 out of 3 images have labels):
$ omero zarr import https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0079A/idr0079_images.zarr --labels --target 23619
  • regular image
$ omero zarr import https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr --labels --target 23619

This PR converts labels into masks. This is not a similar "import" than the one we have for images The current tooling in OMERO will need to be reviewed in order to support a true "import" of labels i.e. only reference to it

will-moore avatar Sep 18 '25 10:09 will-moore

Conflicting PR. Removed from build OMERO-plugins-push#543. See the console output for more details. Possible conflicts:

  • PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py'
    • src/omero_zarr/zarr_import.py

~~--conflicts~~ Conflict resolved in build OMERO-plugins-push#576. See the console output for more details.

snoopycrimecop avatar Sep 27 '25 00:09 snoopycrimecop