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Integrate imageMarshal

Open joshmoore opened this issue 5 years ago • 1 comments

see: https://github.com/IDR/SubmissionWorkflow/pull/7#discussion_r450783384

Rather than curl'ing from OMERO.web (see https://github.com/IDR/SubmissionWorkflow/pull/7), omero-cli-zarr should be able to generate the JSON for imageMarshal directly in Python code.

joshmoore avatar Jul 10 '20 06:07 joshmoore

For individual images https://github.com/ome/omero-cli-zarr/pull/76 should take care of the OMERO rendering metadata transformation both with/without the --bf flag.

For plates, the logic should be in place when using the OMERO API and there is an RFE for implementing --bf support (https://github.com/ome/omero-cli-zarr/issues/85).

Except in the latter case, I think the requirement to curl the imageMarshal URL is now dropped.

sbesson avatar Oct 12 '21 15:10 sbesson