OBFReader: Corrupted zlib compression

Open dominikl opened this issue 6 months ago • 1 comments

java.lang.RuntimeException: Failure response on import!
Category: ::omero::grid::ImportRequest
Name: import-file-exception
Parameters: {filename=sfigueroa_4054/2025-06/23/15-49-37.968/E20250308_Nter-Cter_TPR-GFP_Spy650.msr, stacktrace=loci.formats.FormatException: Corrupted zlib compression
	at loci.formats.in.OBFReader.readFromStack(OBFReader.java:737)
...
	at java.base/java.lang.Thread.run(Thread.java:829)
, message=Corrupted zlib compression}

Not sure if it's just broken files or really Bioformats issue.

Jun 25 '25 10:06 dominikl

Given this is a reader where most of the knowledge came from the vendor, this will need a more precise stack trace as well as a public sample file. Is that something that can be requested?

Jun 29 '25 20:06 sbesson