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SVS: IndexOutOfBoundsException when opening lower resolutions
Issue was raised on forum thread https://forum.image.sc/t/cannot-import-svs-file-using-bioformats/71840
A sample file reproducing the issue can be found at GDC (tested with BF 6.10.1)
Exception in thread "BioFormats-ThumbLoader" java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
at java.util.ArrayList.rangeCheck(ArrayList.java:657)
at java.util.ArrayList.get(ArrayList.java:433)
at loci.formats.in.MinimalTiffReader.openBytes(MinimalTiffReader.java:303)
at loci.formats.in.SVSReader.openBytes(SVSReader.java:173)
The exception does not appear to occur with the highest level resolution and is likely linked to sub-resolution issues with the SVS reader
This issue has been mentioned on Image.sc Forum. There might be relevant details there:
https://forum.image.sc/t/cannot-import-svs-file-using-bioformats/71840/2
Issue appears to have been resolved by https://github.com/ome/bioformats/pull/3962 I will configure the sample file from this issue and add it to the data repo as a follow up.