omarkr8

icon location A fresh PhD graduate in ecology. This GitHub is my attempt in curating the coding methods for my analyses. Not meant to be replicable.

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run wont start. output is in same directory as data

okay so.. base filepath where data is located: /media/labx/harddisk/interartictest base filepath where sample-barcode csv: _same as above_ input data directory: testfastq (which is in the interartictest) the warning says: Output...

run wont start. output is in same directory as data

hmm well that let the job through. so that's good. immediately faced with a IsADirectoryError [Errno21] :/media/labx/harddisk/interartictest was something wrong with my pathing?

run wont start. output is in same directory as data

IsADirectoryError IsADirectoryError: [Errno 21] Is a directory: '/media/lab6/B28C-CBE9/intertest/' Traceback (most recent call last) File "/home/lab6/interartic_bin/lib/python3.7/site-packages/flask/app.py", line 2464, in __call__ return self.wsgi_app(environ, start_response) File "/home/lab6/interartic_bin/lib/python3.7/site-packages/flask/app.py", line 2450, in wsgi_app response =...

run wont start. output is in same directory as data

okay so that worked. I adjusted the filepath for the sample csv. had to also fix some malformations. but the job went through and completed! however, up till this point....