omar-rifai

Hello @effigies, thanks for the feedback. I'm not sure I understand what you mean by structure? Maybe the initial description was not very clear but the purpose of this example...

Understood. will look into the above mentioned points and try to come up with a proper proposal. Thank you.

Apologies for reviving an old post but I was wondering whether there was a followup on this discussion with regards to templates and other grouped intermediate results. I can not...

Thanks for having a look at this. Sorry if this was not clear but the purpose was not to make anything **inside** the `freesurfer` sub-folder BIDS compliant but just having...

Hello @BanDoong, Sorry for the late reply. As I have mentioned in a previous issue, the `psf` values are scanner and tracer specific. In the example you specified, you seem...

Thanks for opening this issue. With regards the default, a point to keep in mind is that the most common usage is likely not to be cluster-based. That being said,...

Can be done as part of project for [BIDS abstractor](https://github.com/aramis-lab/clinica/discussions/446)

Will modify this PR to use the original functions instead of copying code to make the scope of the PR more transparent.

@NicolasGensollen, added the pipeline specific arguments as suggested.

Hello @NicolasGensollen, please merge if the latest modifications address your comments to be able to rebase in #739. Thanks !