Reproducible science with R and RStudio

Here you will find the material I use to teach reproducible science with R and RStudio. This is an old repo, please check this dedicated website I maintain for a workshop on reproducible science I run for the lab.

• Introduction to Git and GitHub with RStudio [slides] [material]

• Writing dynamic and reproducible documents with R Markdown [slides] [material] [practical] [interactive dashboard] [website]

• Manipulate and visualise data in the tidyverse [slides] [material] [tips]

• Focus on GIS and spatial data with sf package [slides] [material]

To-do list:

• Write a general introduction to reproducible science; inspiration from this excellent blog post and slides

• Add practical sessions (like in the R Markdown session; pizza recipe example for GitHub)

• Add something on how to work with Word using redoc

• Add something on how to collaborate on Rmd documents

• Check out this excellent resource

• Introduce the concept of research compendium [paper] [rrtools package]

• Improve the GitHub course with this, this and that