Oliver Clarke

Hi Ellen, I tried this but when I proceed to `train_vae` using the selected subset, I run into an error: ``` (cryodrgn) user@ubuntu:~/processing/cryosparc_projects/francesca/P40/J1649$ cryodrgn train_vae cryodrgn_data/preprocessed/80/cryodrgn_particles.80.0.ft.mrcs --ctf cryodrgn_ctf.pkl --poses cryodrgn_poses.pkl...

Ok, I tried this, but I still get the same error using the filtered ctf and pose files... ``` cryodrgn train_vae cryodrgn_data/preprocessed/80/cryodrgn_particles.80.0.ft.mrcs --ctf cryodrgn_ctf_100.pkl --poses cryodrgn_poses_100.pkl --zdim 8 -n 50...

Hmmm - this is different behavior from Coot 0.9x. Is it better this way? I'm not sure - generally, if I interact with the main window I want everything else...

Ah sorry I missed the CCPEM discussion! And many thanks for the quick reply :) Re this: > in the current implementation it doesn't work this way (it is silently...

Ah you're right, they didn't change at all! This feature is quite useful in cases of pseudosymmetry, we have mostly used it in the context of auto-refine, but it would...

Ah thanks Ellen that seems to have done the trick, running now!

Hmmm... it gets further, but now crashes after generating the initial volumes: ``` 2022-10-27 20:23:27.006881 [ 1.44096768 -1.611202 -0.97092277 1.32117772 -0.29614815 4.0233016 0.03508829 -2.55882859] 2022-10-27 20:23:27.421523 Finished in 0:05:24.691943 2022-10-27...

Ah, but I hadn't run `cryodrgn analyze` first (or not for that specific iteration) - is that required?

Hmmm - running `analyze_landscape` after `cryodrgn analyze` gets further, but then I run into another error: ``` 2022-10-27 20:39:15.012817 State 8: 165 particles 2022-10-27 20:39:15.012983 State 9: 1 volumes 2022-10-27...

Hi @vineetbansal, here is the output: ``` (cryodrgn2) python -c "import seaborn; print(seaborn.__version__)" 0.12.1 ``` Ok will install again! I think last time I installed was late last week (from...