Olga Botvinnik

There was a bug with 0.6.8 so I don't use it. This is 0.6.7: ```  reflow version 0.6.7 (go1.10) ```

Ah I see, that explains some of the issues I was having! I'd Ctrl-C the reflow process, `git pull` for the latest workflow and then get the exact same error,...

The other question I have is, isn't Reflow supposed to launch separate instances for the separate steps of the pipeline? Why is it trying to launch the most expensive instance...

Thanks! Using `bbhash`, does it matter if the data is protein k-mers? With differential hashes, I have the murmur hash-generated hashval, so would that be compatible with this as-is or...

> Then, we build a table that connects query k-mers to cDBG unitig IDs. Here the offset in the table is the MPHF of the query k-mer, built using bbhash,...

Would using sourmash (https://github.com/dib-lab/sourmash) help with reducing database size as it subsamples the k-mers from the database using MinHash?

Some information about Sourmash: https://github.com/dib-lab/sourmash/issues/725 And their paper: https://f1000research.com/articles/8-1006

Very interesting! What would you describe as the best way to do host removal? On Wed, Sep 18, 2019, 16:48 Daniel Straub wrote: > If (in addition to rRNA removal...

Ah yes I forgot the key info: program version!! Here it is: ``` (outrigger) ➜ outrigger git:(master) ✗ bedtools --version bedtools v2.25.0 ``` I installed it via `bioconda`.

Hmm in creating a [repo](https://github.com/olgabot/bedtools_flank_seq_strand_test) with a bed file and a Makefile to reproduce the error, I suddenly don't get it anymore... I must have made some `flank` mistake. Anecdotally,...