spaln
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Genome mapping and spliced alignment of cDNA or amino acid sequences
Hi, Try to configure in Ubuntu 20 LTS server, right after the ./configure it got stalled. Is the software in use ?
Hi, when trying to package the latest version 2.4.13d the [CI test we are using in Debian](https://salsa.debian.org/med-team/spaln/-/blob/master/debian/tests/run-unit-test#L22-L26) fails with: sortgrcd -O15 -F2 dictdisc.cf.grd.gz ... free(): invalid size Here you can...
Hi, I found some extremly long introns in spaln results (when mapping protein sequences to genome), some are ~1Mb, is there a way to limit intron length when running splan?...
Hi! I get a error! Gd:0 No:0 My:4096 MS:0 Mb:21588 Tw:0 Tl:123750096 0.00 100.00 0.00 : Block table may be destroyed ! What's means about this! When i used braker2...
Dear Osamu, thank you for making, maintaining and supporting this great program. I was hoping you could help me with the following issue I ran into. I get an alignment...
Hi- I seem to be unable to make spaln work even in the most basic case. I would appreciate any guidance. This is using spaln 2.4.9 installed via bioconda. My...
Hi, I found that almost all spaln mRNA without the final stop codon, is there a way to include the final stop codon? here are my command lines: makeidx.pl -inp...
Hi, I realised that spaln was moved to github and thus I wanted to release an updated Debian package. We have created a [CI test](https://salsa.debian.org/med-team/spaln/-/blob/master/debian/tests/run-unit-test) for version 2.4.1, which basically...
Hello Osamu First off, thanks a lot for the great program and continued support/enhancement on this. I had a question on job parallelization. Assume I have a protein query file...
Hi！I have done a de novo transcriptome assembly, now I'm trying to map the assembled transcriptome to a genome of relative species. I have used 'makeidx.pl' command in seqdb ：...
