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Dear Vicencio, > I've tried again with 2.4.2, and the problem persists: I am somewhat sad to hear this, but am glad that spaln seems to be useful for your...

Dear Andreas, Thank you very much for your reports. I have just uploaded a bug-fix version (ver.2.4.7) to the GitHub site. Compared with ver.2.4.1, the latest version shows not dramatically...

Dear Andreas, Change the last line of CItest script from sortgrcd -O15 -F2 dictdisc.grd.gz to sortgrcd -O15 -F2 dictdisc.cf.grd.gz and then test again. Osamu,

Dear Andreas, Thank you again for your continued efforts. I admit that the error message is not much informative. I will change it in the next release. As mentioned earlier,...

Dear Andreas, Thanks. I have an additional comment. The -t${NCPUS} option would be more beneficial in the map/align mode rather than in the format mode. spaln -Q7 -d dictdisc_g -T...

Dear Kun, According to Refseq, the longest intron of human is longer than 1.2Mbp, so that an intron longer than 1Mb might not be illegal. However, very long introns can...

Dear Kun, Sorry for the long period of not responding to your comment. I have just updated a new version Ver2.4.12 (by mistakes I have already used Ver2.4.10 and Ver2.4.11,...

1st case: Spaln does not carefully consider the cases where the first or the last codon is incomplete. The -LS option may be helpful to trim out such incomplete terminal...

Yes, your query appears to match the reverse complementary strand of the genomic sequence. ;C complement(join(22030..22242)) indicates the exonic range of the genomic sequence that matches the query. In this...

Thank you for your report. I wander some options you set might be troublesome. 1. -E option is obsolete, and should not be used. 2. The argument to -t option...