B. Ogan Mancarcı

Generic install_remote to accept non specific remote

4

I have been fiddling with a way to take in a bunch of strings as specified by the same format as `Remotes` in a description file, along with default CRAN...

##### Description Trying to use swagger-codegen on [this](https://github.com/swagger-api/swagger-codegen/files/9429783/openapi.txt) json to generate R code by doing ``` java -jar swagger-codegen-cli.jar generate -l r -o swagger_gen -i openapi.txt ``` I get the...

Tracking missing obsolete terms that are removed from the ontology records

4

**Is your request related to a specific disease? Please describe.** No **Describe the proposed ** I am a member of the @PavlidisLab and we have data annotated with older versions...

Use grimoire as a data source

1

I believe you are adding spells by reading them one by one from the book but you might have an easier time parsing markdown files created for https://github.com/thebombzen/grimoire. They are...

Should work even when the output changes due to updates

Updating to new NCBI resources

1

Homologene is finally being [retired](https://ftp.ncbi.nih.gov/pub/HomoloGene/README) while their new resources allow access to up to date data. Will likely either update this package or make a new one to be able...

ensembl support

1

Ebsembl is problematic because each species has its own database with their own gene symbol name that needs to be manually identified. To be as smooth as homologene, I need...

It seems like genes_history file can gain or lose events retroactively. This means certain paths to new genes occasionally break which means certain genes can become unavailable between different versions...

It seems like there are times where 2 different genes with different HIDs can converge into a single gene ID. find a way to deal with that. If given a...