uberon

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UBERON:0002030 nipple should be part_of UBERON:0001911 mammary gland

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**Uberon term** UBERON:0002030 nipple **Suggested revision and reasons** UBERON:0002030 nipple isn't linked to mammary gland (other than indirectly via develops_from some mammary ridge and mammary duct channels_into some nipple). Please...

paola-scibite

Logical axioms from external relationships found in edit file

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After I did cleansing in #2377, some logical axioms are only present in UBERON. [Typedef] id: capable_of name: capable of xref: RO:0002215 is_a: functionally_related_to ! functionally related to [Typedef] id:...

anitacaron

process vs. processual entity

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@cmungall @matentzn @dosumis @addiehl @diatomsRcool @johnwjudkins Ontobee shows [UBERON](http://www.ontobee.org/ontology/UBERON) has both `process` and `processual entity` classes. Is the `processual entity` intended to be the same as [BFO1.1 processual entity](http://www.ontobee.org/ontology/BFO11?iri=http://www.ifomis.org/bfo/1.1/span%23ProcessualEntity)? Ontobee...

wdduncan

multicellular organism and organism substance should be disjoint

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It came up in discussion with @cmungall that currently there is no disjunction between multicellular organism and organism substance. Since NCBITaxon terms correspond to multicellular organisms, someone can define a...

ddooley

material structures needed to replace anatomical space fillers in GO logical definitions

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I'm trying to resolve all [reasoning violations in GO](https://github.com/geneontology/go-ontology/issues/16524) resulting from property range axioms. The remaining issues have to do with anatomical spaces used as targets of [results in development...

balhoff

Moving channels_from/channels_to to RO

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currently uberon has custom OP channels_from/to We should move this to RO if we want to continue using it. If not we should replace with an existing RO term. Related...

shawntanzk

/!\ PR for testing purposes, do not merge /!\ This PR updates the ODK configuration file to what it could look like when support for managing mapping sets and bridge...

gouttegd

Revert orcid-contributor-violation https check (do not merge)

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Fixes #2318

anitacaron

Fix logical axioms from external relationships

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Fixes #2453

anitacaron

Revert orcid-contributor-violation https check

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Undo this commit: https://github.com/obophenotype/uberon/commit/af0d05e64ae30c3ddce21c4709916937bdc7fbf8 when https://github.com/protegeproject/protege/issues/1045 is addressed

shawntanzk