Taxon constraints in the different uberon versions

Open fbastian opened this issue 10 years ago • 2 comments

Taxon constraints are not present in all files. For instance, there is no "only_in_taxon" relations in ext.obo, but they are present in ext.owl.

Also, I noticed some variations in the inferences between ext.owl and composite-metazoan.owl: for instance, UBERON:0000023 "wing" is inferred to be unsatisfiable for human using ext.owl, but not when using composite-metazoan.owl. Would this be caused by some relations not removed by the SpeciesSubsetterUtil before inference?

Jun 18 '15 12:06 fbastian

One of the problems is that, in composite-metazoan.owl, there is absolutely no EC axioms to owl:Nothing. They are present in ext.owl.

Jun 23 '15 14:06 fbastian

EC axioms to owl:Nothing still absent from composite-metazoan.owl, and present in ext.owl.

Jul 19 '16 21:07 fbastian

We have a new composite-metazoan.owl version and we don't release ext.owl anymore because it was the same as uberon.owl.

Dec 11 '23 15:12 anitacaron