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populate mucosal epithelium terms

Open dosumis opened this issue 1 year ago • 2 comments

Aim: Users querying for parts a specific mucosa should find the epithelium term and from there the cell types that are part of that epithelium

We have 120 mucosa terms:

image

But only 60 'epithelium of muscosa' terms

image

To fix:

  • Generate lists of terms
  • modify to isolate general anatomical component & align/diff.
  • --> list of terms to add
  • Remaining terms, review manually.

dosumis avatar Dec 16 '24 15:12 dosumis

Formal def:

Image

Strategy for query with UberGraph:

  1. Find all mucosa --> what they are part_of
  2. Find all epithelia that are part_of these structures --> check if they are subClassOf "epithelium of mucosa"

FOr those that are not - we should be adding part relationship to the relevant mucosa term

Potential difficulty - UberGraph + reasoning will give too many results. Also do we want to add for all grouping terms?

dosumis avatar Jan 20 '25 16:01 dosumis

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar Jul 20 '25 03:07 github-actions[bot]