uberon icon indicating copy to clipboard operation
uberon copied to clipboard

NTR: skeletal terms for early ray-finned fishes (Actinopterygii)

Open wdahdul opened this issue 1 year ago • 4 comments

Preferred term label: Antopercle

Synonyms None

Definition (free text, please give PubMed ID) Paired dermal element anterior to the opercle and posterior to the dermohyal. An antopercle is present in Pteronisculus stensioi, see Nielsen (1942) plate 4 of specimen No. 39. Reference: Nielsen, E. (1942). Studies on Triassic fishes from East Greenland 1. Glaucolepis and Boreosomus. Palaeozoologica Groenlandica 1, 1–403.

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon) dermal bone http://purl.obolibrary.org/obo/UBERON_0008907 ‘part of’ some dorsal hyoid arch skeleton http://purl.obolibrary.org/obo/UBERON_0011152

Your nano-attribution (ORCID) https://orcid.org/0000-0001-7102-362X


Preferred term label: Dermohyal

Synonyms antoperculum (related) antopercular (related)

Definition (free text, please give PubMed ID) Paired element that is typically fused to the hyomandibula. This element is often referred to as the antoperculum/antopercular but is distinct in being fused to the hyomandibula. An example of a taxon where the dermohyal is present is Cheirolepis trailli, as figured by Giles et al. (2015) figure 9 of NMS.1956.19. Reference: Giles, S., Coates, M. I., Garwood, R. J., Brazeau, M. D., Atwood, R., Johanson, Z., & Friedman, M. (2015). Endoskeletal structure in Cheirolepis (Osteichthyes, Actinopterygii), An early ray‐finned fish. Palaeontology, 58(5), 849–870.

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon) dermal bone http://purl.obolibrary.org/obo/UBERON_0008907 ‘part of’ some dorsal hyoid arch skeleton http://purl.obolibrary.org/obo/UBERON_0011152

Your nano-attribution (ORCID) https://orcid.org/0000-0001-7102-362X


Preferred term label: Lateral gular

Synonyms None

Definition (free text, please give PubMed ID) Paired dermal elements on the ventral surface of the skull bearing the gular pit line. Lateral gulars are present in Concentrilepis minnekahtaensis, as shown by Stack and Gottfried (2022) figure 11 of the ventral piece of FMNH PF 3721. Reference: Stack, J., & Gottfried, M. D. (2022). A new, exceptionally well-preserved Permian actinopterygian fish from the Minnekahta Limestone of South Dakota, USA. Journal of Systematic Palaeontology, 19(18), 1271–1302.

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon) dermal bone http://purl.obolibrary.org/obo/UBERON_0008907 ‘part of’ some ventral hyoid arch skeleton http://purl.obolibrary.org/obo/UBERON_0011153 ‘part of’ some dermatocranium http://purl.obolibrary.org/obo/UBERON_0003113

Your nano-attribution (ORCID) https://orcid.org/0000-0001-7102-362X

wdahdul avatar Nov 21 '24 20:11 wdahdul

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar May 21 '25 02:05 github-actions[bot]

@dragon-ai-agent please make it so

cmungall avatar May 21 '25 02:05 cmungall

I've added the requested skeletal terms for early ray-finned fishes (Actinopterygii) and created a PR at https://github.com/obophenotype/uberon/pull/3543.

The three new terms are:

  • antopercle (UBERON:7770001): Paired dermal element anterior to the opercle and posterior to the dermohyal
  • dermohyal (UBERON:7770002): Paired element that is typically fused to the hyomandibula
  • lateral gular (UBERON:7770003): Paired dermal elements on the ventral surface of the skull bearing the gular pit line

Each term includes the appropriate parent classes and relationships, along with the contributor attribution (ORCID).

@dragon-ai-agent

cmungall avatar May 21 '25 02:05 cmungall

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar Nov 19 '25 02:11 github-actions[bot]