update HBA bridge mappings to nerves to point to nerve roots

[AvolaAmg]

Fixes some #3264

@hkir-dev see if it fixes the issue on PCL

[hkir-dev]

I conducted some tests, and these updates resolved the inconsistencies mentioned in issue https://github.com/brain-bican/human_brain_atlas_ontology/issues/2

[github-actions[bot]]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-05-24/uberon-base.owl
• Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-main.owl/uberon-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-05-24/uberon-base.owl
• Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-pr.owl/uberon-base.owl

Ontology imports

Ontology annotations

accessory XI nerve http://purl.obolibrary.org/obo/UBERON_0002019

Removed

• accessory XI nerve hasDbXref "HBA:9340"

accessory nerve root http://purl.obolibrary.org/obo/UBERON_0014615

Added

• accessory nerve root hasDbXref "HBA:9340"

cranial nerve http://purl.obolibrary.org/obo/UBERON_0001785

Removed

• cranial nerve hasDbXref "HBA:9299"

glossopharyngeal nerve http://purl.obolibrary.org/obo/UBERON_0001649

Removed

• glossopharyngeal nerve hasDbXref "HBA:9334"

glossopharyngeal nerve root http://purl.obolibrary.org/obo/UBERON_0019310

Added

• glossopharyngeal nerve root hasDbXref "HBA:9334"

hypoglossal nerve http://purl.obolibrary.org/obo/UBERON_0001650

Removed

• hypoglossal nerve hasDbXref "HBA:9343"

hypoglossal nerve root http://purl.obolibrary.org/obo/UBERON_0004675

Added

• hypoglossal nerve root hasDbXref "HBA:9343"

root of cranial nerve http://purl.obolibrary.org/obo/UBERON_0006843

Added

• root of cranial nerve hasDbXref "HBA:9299"

root of vagus nerve http://purl.obolibrary.org/obo/UBERON_0011213

Added

• root of vagus nerve hasDbXref "HBA:9337"

trigeminal nerve http://purl.obolibrary.org/obo/UBERON_0001645

Removed

• trigeminal nerve hasDbXref "HBA:9322"

trigeminal nerve root http://purl.obolibrary.org/obo/UBERON_0004673

Added

• trigeminal nerve root hasDbXref "HBA:9322"

vagus nerve http://purl.obolibrary.org/obo/UBERON_0001759

Removed

• vagus nerve hasDbXref "HBA:9337"

[anitacaron]

#gogoeditdiff

[github-actions[bot]]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/__w/uberon/uberon/master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/__w/uberon/uberon/branch/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

accessory XI nerve http://purl.obolibrary.org/obo/UBERON_0002019

Removed

• accessory XI nerve database_cross_reference "HBA:9340"^^string

accessory nerve root http://purl.obolibrary.org/obo/UBERON_0014615

Added

• accessory nerve root database_cross_reference "HBA:9340"^^string

cranial nerve http://purl.obolibrary.org/obo/UBERON_0001785

Removed

• cranial nerve database_cross_reference "HBA:9299"^^string

glossopharyngeal nerve http://purl.obolibrary.org/obo/UBERON_0001649

Removed

• glossopharyngeal nerve database_cross_reference "HBA:9334"^^string

glossopharyngeal nerve root http://purl.obolibrary.org/obo/UBERON_0019310

Added

• glossopharyngeal nerve root database_cross_reference "HBA:9334"^^string

hypoglossal nerve http://purl.obolibrary.org/obo/UBERON_0001650

Removed

• hypoglossal nerve database_cross_reference "HBA:9343"^^string

hypoglossal nerve root http://purl.obolibrary.org/obo/UBERON_0004675

Added

• hypoglossal nerve root database_cross_reference "HBA:9343"^^string

root of cranial nerve http://purl.obolibrary.org/obo/UBERON_0006843

Added

• root of cranial nerve database_cross_reference "HBA:9299"^^string

root of vagus nerve http://purl.obolibrary.org/obo/UBERON_0011213

Added

• root of vagus nerve database_cross_reference "HBA:9337"^^string

trigeminal nerve http://purl.obolibrary.org/obo/UBERON_0001645

Removed

• trigeminal nerve database_cross_reference "HBA:9322"^^string

trigeminal nerve root http://purl.obolibrary.org/obo/UBERON_0004673

Added

• trigeminal nerve root database_cross_reference "HBA:9322"^^string

vagus nerve http://purl.obolibrary.org/obo/UBERON_0001759

Removed

• vagus nerve database_cross_reference "HBA:9337"^^string

[anitacaron]

I'll merge it because Alida is away, and we need a UBERON release soon.