uberon icon indicating copy to clipboard operation
uberon copied to clipboard

Remove oio:id from Uberon and CL

Open shawntanzk opened this issue 1 year ago • 4 comments

https://api.triplydb.com/s/UzfGT0r5T The above sparql query shows a list of terms that do not have oio:id on them Looks like the same 52 terms as https://github.com/obophenotype/uberon/issues/3002

shawntanzk avatar Mar 01 '24 09:03 shawntanzk

oio:id is inserted automatically by the OWL API OBO parser. I thought about dropping this in my open PR, but didn't want to go changing behavior arbitrarily.

balhoff avatar Mar 01 '24 14:03 balhoff

  • @shawntanzk - It should definitely be treated as deprecated. It should never be relied on as can be derived. I would love for it to be removed from the OWL-API OBO parser. Anyone who relies on it should have to fix their pipeline.

dosumis avatar Apr 15 '24 13:04 dosumis

I've already removed it from all our pipelines, just thought I'd also report it back to source too :)

shawntanzk avatar Apr 15 '24 22:04 shawntanzk

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar Oct 13 '24 02:10 github-actions[bot]