central and lateral incisor tooth

[meghalithic]

changing definition and EQ issue #2719

see discussion here on 28/11/2022.

[meghalithic]

@cmungall @RDruzinsky could I get some help here?

[github-actions[bot]]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[github-actions[bot]]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[github-actions[bot]]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[anitacaron]

#gogoeditdiff

[anitacaron]

#gogoeditdiff

[github-actions[bot]]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-01-02/uberon-simple.owl
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-01-02/uberon-simple.owl
• Loaded from: file:/work/src/ontology/uberon-simple.owl

Ontology imports

Ontology annotations

incisor tooth 1 http://purl.obolibrary.org/obo/UBERON_0018551

Removed

• incisor tooth 1 has exact synonym "central incisor"

• incisor tooth 1 label "central incisor tooth"

• incisor tooth 1 SubClassOf in central side of some incisor region of dentition

Added

• incisor tooth 1 label "incisor tooth 1"

• incisor tooth 1 definition "The incisor tooth of the upper or lower jaw that is phylogenetically number 1."

  • database_cross_reference "https://orcid.org/0000-0003-2699-3066"

• incisor tooth 1 has exact synonym "central incisor"

  • has_synonym_type preferred term when talking about an instance of this class in Homo sapiens

• incisor tooth 1 has exact synonym "first incisor tooth"

incisor tooth 2 http://purl.obolibrary.org/obo/UBERON_0018552

Removed

• incisor tooth 2 has exact synonym "lateral incisor"

• incisor tooth 2 label "lateral incisor tooth"

• incisor tooth 2 SubClassOf lateral structure

• incisor tooth 2 SubClassOf in lateral side of some incisor region of dentition

Added

• incisor tooth 2 label "incisor tooth 2"

• incisor tooth 2 has exact synonym "lateral incisor"

  • has_synonym_type preferred term when talking about an instance of this class in Homo sapiens

• incisor tooth 2 definition "The incisor tooth of the upper or lower jaw that is phylogenetically number 2."

  • database_cross_reference "https://orcid.org/0000-0003-2699-3066"

• incisor tooth 2 has exact synonym "second incisor tooth"

lower central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018601

Removed

• lower central incisor tooth SubClassOf incisor tooth 1

Added

• lower central incisor tooth has exact synonym "lower first incisor tooth"

• lower central incisor tooth SubClassOf in central side of some incisor region of dentition

lower central secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018568

Added

• lower central secondary incisor tooth has exact synonym "secondary lower first incisor tooth"

lower lateral incisor tooth http://purl.obolibrary.org/obo/UBERON_0018602

Removed

• lower lateral incisor tooth SubClassOf incisor tooth 2

Added

• lower lateral incisor tooth has exact synonym "lower second incisor tooth"

• lower lateral incisor tooth SubClassOf in lateral side of some incisor region of dentition

• lower lateral incisor tooth SubClassOf lateral structure

lower lateral secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018570

Added

• lower lateral secondary incisor tooth has exact synonym "secondary lower second incisor tooth"

primary central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018553

Removed

• primary central incisor tooth SubClassOf incisor tooth 1

Added

• primary central incisor tooth has exact synonym "primary first incisor tooth"

• primary central incisor tooth SubClassOf in central side of some incisor region of dentition

primary lateral incisor tooth http://purl.obolibrary.org/obo/UBERON_0018554

Removed

• primary lateral incisor tooth SubClassOf incisor tooth 2

Added

• primary lateral incisor tooth has exact synonym "primary second incisor tooth"

• primary lateral incisor tooth SubClassOf lateral structure

• primary lateral incisor tooth SubClassOf in lateral side of some incisor region of dentition

upper central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018603

Removed

• upper central incisor tooth SubClassOf incisor tooth 1

Added

• upper central incisor tooth has exact synonym "upper first incisor tooth"

• upper central incisor tooth SubClassOf in central side of some incisor region of dentition

upper central primary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018593

Added

• upper central primary incisor tooth has exact synonym "primary upper first incisor tooth"

upper central secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0016454

Added

• upper central secondary incisor tooth has exact synonym "secondary upper first incisor tooth"

upper lateral incisor tooth http://purl.obolibrary.org/obo/UBERON_0018604

Removed

• upper lateral incisor tooth SubClassOf incisor tooth 2

Added

• upper lateral incisor tooth has exact synonym "upper second incisor tooth"

• upper lateral incisor tooth SubClassOf lateral structure

• upper lateral incisor tooth SubClassOf in lateral side of some incisor region of dentition

upper lateral primary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018594

Added

• upper lateral primary incisor tooth has exact synonym "primary upper second incisor tooth"

upper lateral secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0016455

Added

• upper lateral secondary incisor tooth has exact synonym "secondary upper second incisor tooth"

[github-actions[bot]]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

incisor tooth 1 http://purl.obolibrary.org/obo/UBERON_0018551

Removed

• incisor tooth 1 has exact synonym "central incisor"^^string

• incisor tooth 1 label "central incisor tooth"^^string

• incisor tooth 1 EquivalentTo incisor tooth and (in central side of some incisor region of dentition)

Added

• incisor tooth 1 label "incisor tooth 1"^^string

• incisor tooth 1 definition "The incisor tooth of the upper or lower jaw that is phylogenetically number 1."^^string

  • database_cross_reference "https://orcid.org/0000-0003-2699-3066"^^string

• incisor tooth 1 has exact synonym "central incisor"^^string

  • has_synonym_type preferred term when talking about an instance of this class in Homo sapiens

• incisor tooth 1 has exact synonym "first incisor tooth"^^string

• incisor tooth 1 SubClassOf incisor tooth

incisor tooth 2 http://purl.obolibrary.org/obo/UBERON_0018552

Removed

• incisor tooth 2 has exact synonym "lateral incisor"^^string

• incisor tooth 2 label "lateral incisor tooth"^^string

• incisor tooth 2 EquivalentTo incisor tooth and (in lateral side of some incisor region of dentition)

Added

• incisor tooth 2 label "incisor tooth 2"^^string

• incisor tooth 2 has exact synonym "lateral incisor"^^string

  • has_synonym_type preferred term when talking about an instance of this class in Homo sapiens

• incisor tooth 2 definition "The incisor tooth of the upper or lower jaw that is phylogenetically number 2."^^string

  • database_cross_reference "https://orcid.org/0000-0003-2699-3066"^^string

• incisor tooth 2 has exact synonym "second incisor tooth"^^string

• incisor tooth 2 SubClassOf incisor tooth

lower central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018601

Added

• lower central incisor tooth has exact synonym "lower first incisor tooth"^^string

lower central secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018568

Added

• lower central secondary incisor tooth has exact synonym "secondary lower first incisor tooth"^^string

lower lateral incisor tooth http://purl.obolibrary.org/obo/UBERON_0018602

Added

• lower lateral incisor tooth has exact synonym "lower second incisor tooth"^^string

lower lateral secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018570

Added

• lower lateral secondary incisor tooth has exact synonym "secondary lower second incisor tooth"^^string

primary central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018553

Added

• primary central incisor tooth has exact synonym "primary first incisor tooth"^^string

primary lateral incisor tooth http://purl.obolibrary.org/obo/UBERON_0018554

Added

• primary lateral incisor tooth has exact synonym "primary second incisor tooth"^^string

upper central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018603

Added

• upper central incisor tooth has exact synonym "upper first incisor tooth"^^string

upper central primary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018593

Added

• upper central primary incisor tooth has exact synonym "primary upper first incisor tooth"^^string

upper central secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0016454

Added

• upper central secondary incisor tooth has exact synonym "secondary upper first incisor tooth"^^string

upper lateral incisor tooth http://purl.obolibrary.org/obo/UBERON_0018604

Added

• upper lateral incisor tooth has exact synonym "upper second incisor tooth"^^string

upper lateral primary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018594

Added

• upper lateral primary incisor tooth has exact synonym "primary upper second incisor tooth"^^string

upper lateral secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0016455

Added

• upper lateral secondary incisor tooth has exact synonym "secondary upper second incisor tooth"^^string

[github-actions[bot]]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[anitacaron]

@wdduncan could you please review this PR?

[anitacaron]

@wdduncan you can check the nice diff view here

[github-actions[bot]]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[wdduncan]

This seems fine to me.