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Published 20 hours ago • verified publisher icon obophenotype

Two 'anatomical entity' in Uberon

Open zhengj2007 opened this issue 3 years ago • 9 comments

Uberon term Two term in UBERON, UBERON_0001062 and CARO_0000000 with same label 'anatomical entity'

Bug description Are these terms same? If same, why do they have different super classes? If they are not equivalent, can they have different labels with definitions? So, we know which term we should use.

zhengj2007 avatar Feb 09 '22 17:02 zhengj2007

See also

  • #2348

cmungall avatar Mar 14 '22 15:03 cmungall

@cmungall assigning to you as it relates to the other tickets, also added to agenda. PS I'm guessing using the UBERON term is more straightforward, but defs need more clarity on this.

shawntanzk avatar May 02 '22 09:05 shawntanzk

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar Nov 05 '22 02:11 github-actions[bot]

Related to this, are all CARO_XXXXXXX terms being phased out in UBERON? Is there a timeline for that?

ddooley avatar Mar 04 '23 07:03 ddooley

Giving a plus one for a fix here

shawntanzk avatar Mar 27 '23 11:03 shawntanzk

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar Sep 24 '23 01:09 github-actions[bot]

Is it that GO also would need to switch to Uberon anatomical entity?

ddooley avatar Sep 24 '23 15:09 ddooley

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] avatar Mar 24 '24 01:03 github-actions[bot]

Seems that http://purl.obolibrary.org/obo/CARO_0000000 anatomical entity is still in UBERON in OLS. Maybe it has been removed upstream in draft though?

ddooley avatar Mar 28 '24 18:03 ddooley