obophenotype
Add oRGC2 retinal ganglion cell orthotype term (CL_9900000)
Plan for creating oRGC2 term (New Term Request)
- [x] Understand the issue requirements
- [x] Review existing retinal ganglion cell terms for format
- [x] Identify appropriate temporary ID: CL_9900000
- [x] Add the new term to cl-edit.owl with all required annotations
- [x] Validate the changes with robot convert
- [x] Run robot reason to check logical consistency
- [x] Address code review feedback
- [x] Run security checks
- [x] Address PR comment: Reinstate in-text references in definition
- [x] Address PR comment: Remove hasOBONamespace annotation
Summary
Successfully created new term CL_9900000 for oRGC2 with:
- Label: oRGC2
- Parent: CL_0000740 (retinal ganglion cell)
- Definition with in-text references (Hahn et al., 2023; Tran et al., 2019) and PMID annotations (PMID:31784286, PMID:37066415)
- Contributor ORCID annotation
- ID annotation
- All validations passed
Original prompt
This section details on the original issue you should resolve
<issue_title>[NTR] Create term for oRGC2</issue_title> <issue_description>Please check that the term does not already exist by using the ontology search tool OLS: https://www.ebi.ac.uk/ols4/ontologies/cl
Preferred term label oRGC2
Synonyms (add reference(s), please)
Definition (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX) A conserved retinal ganglion cell orthotype whose transcriptomic profile groups together ON parasol RGCs from primate foveal and peripheral retina with their molecularly homologous mouse α RGC subtype (ON‑transient α RGC, C41) (Hahn et al., 2023; Tran et al., 2019).
Reference: PMID:37066415 PMID:31784286
Parent cell type term (check the hierarchy here https://www.ebi.ac.uk/ols4/ontologies/cl) CL_0000740
Anatomical structure where the cell type is found (check Uberon for anatomical structures: https://www.ebi.ac.uk/ols4/ontologies/uberon)
Your ORCID https://orcid.org/0000-0002-5507-2103
Additional notes or concerns
</issue_description>
Comments on the Issue (you are @copilot in this section)
- Fixes obophenotype/cell-ontology#3519
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