Related to #1606

Oct 17 '22 09:10 shawntanzk

I've added the OP lacks_post_synaptic_terminals_in to CL namespace, but if want to follow the negative stuff, we might want to expand it. The rest of the OP (including the negative ones) already exist in CL so I replaced them. Probably need to look into the CP terms used, and replace them accordingly

Oct 17 '22 09:10 shawntanzk

make: *** [Makefile:175: reports/cl-edit.owl-obo-report.tsv] Error 1

Level	Rule Name	Subject	Property	Value
ERROR	duplicate_definition	CL:0004250	IAO:0000115	An amicrine that stratifies dendrites at two and only two locations.
ERROR	duplicate_definition	CL:0004251	IAO:0000115	An amicrine that stratifies dendrites at two and only two locations.
ERROR	duplicate_definition	CL:0004252	IAO:0000115	An amicrine that stratifies dendrites at two and only two locations.
ERROR	duplicate_definition	CL:0004253	IAO:0000115	An amicrine that stratifies dendrites at two and only two locations.
ERROR	duplicate_definition	CL:0003023	IAO:0000115	A retinal ganglion cell C outer that has dense dendritic diversity.
ERROR	duplicate_definition	CL:0004126	IAO:0000115	A retinal ganglion cell C outer that has dense dendritic diversity.
ERROR	duplicate_definition	CL:0003022	IAO:0000115	A retinal ganglion cell C inner that has dense dendritic diversity.
ERROR	duplicate_definition	CL:0003025	IAO:0000115	A retinal ganglion cell C inner that has dense dendritic diversity.
ERROR	duplicate_definition	CL:0004125	IAO:0000115	A retinal ganglion cell C inner that has dense dendritic diversity.
ERROR	duplicate_definition	CL:0004115	IAO:0000115	A monostratified retinal ganglion cell with small to medium soma and small to medium dendritic field.
ERROR	duplicate_definition	CL:0004183	IAO:0000115	A monostratified retinal ganglion cell with small to medium soma and small to medium dendritic field.
ERROR	duplicate_definition	CL:0003039	IAO:0000115	A monostratified retinal ganglion cell with large soma and large dendritic field, with dense dendritic arbor
ERROR	duplicate_definition	CL:0003043	IAO:0000115	A monostratified retinal ganglion cell with large soma and large dendritic field, with dense dendritic arbor

Oct 17 '22 10:10 shawntanzk

The following CP terms need to be replaced (for transparency, I'll commit the sparql query to this PR too):

term	label	def
http://purl.obolibrary.org/obo/CP_0000121	asymmetric dendritic arbor	A dendritic arbor that is asymmetrical in respect to the soma.
http://purl.obolibrary.org/obo/CP_0001060	complex dendritic arbor	A dendritic arbor that is relatively complex.
http://purl.obolibrary.org/obo/CP_0001062	sparse dendritic arbor	A dendritic arbor that is relatively sparse.
http://purl.obolibrary.org/obo/CP_0000002	symmetric dendritic arbor	A dendritic arbor that is symmetrical in respect to the soma.
http://purl.obolibrary.org/obo/CP_0000111	medium dendritic arbor	A dendritic arbor with a medium, or normal, density.
http://purl.obolibrary.org/obo/CP_0000110	dense dendritic arbor	A dendritic arbor with increased branchiness.
http://purl.obolibrary.org/obo/CP_0000105	large dendritic field	A dendritic field with a large area.
http://purl.obolibrary.org/obo/CP_0000109	medium to large dendritic field	A dendritic field with a medium to large size.
http://purl.obolibrary.org/obo/CP_0000106	medium dendritic field	A dendritic field with a medium, or normal, area.
http://purl.obolibrary.org/obo/CP_0000107	small dendritic field	A dendritic field with a small size.
http://purl.obolibrary.org/obo/CP_0000108	small to medium dendritic field	A dendritic field with a small to medium size.
http://purl.obolibrary.org/obo/CP_0001079	large dendritic field with dense and symmetric arbor	A large dendritic field with a symmetric arbor that has dense branching.
http://purl.obolibrary.org/obo/CP_0001077	large dendritic field with dense and assymetric arbor	A large dendritic field with an asymmetric arbor that has dense branching.
http://purl.obolibrary.org/obo/CP_0001076	large dendritic field with dense arbor density	A large dendritic field with dense arbor density.
http://purl.obolibrary.org/obo/CP_0001072	large dendritic field with medium arbor density and long secondary shaft	A large dendritic field with medium arbor density that includes a long secondary dendrite shaft that branches off the soma.
http://purl.obolibrary.org/obo/CP_0001073	large dendritic field with medium arbor density and average length secondary shaft	A large dendritic field with medium arbor density that includes an average length secondary dendrite shaft that branches off the soma.
http://purl.obolibrary.org/obo/CP_0001070	large dendritic field with medium arbor density	A large dendritic field with medium arbor density.
http://purl.obolibrary.org/obo/CP_0001069	large dendritic field with sparse arbor density	A large dendritic field with sparse arbor density.
http://purl.obolibrary.org/obo/CP_0001080	large dendritic field with thick dendrites	A large dendritic field with thick dendrites.
http://purl.obolibrary.org/obo/CP_0001078	medium dendritic field with assymetric arbor	A medium dendritic field with assymetric arbor.
http://purl.obolibrary.org/obo/CP_0001086	small dendritic field with assymetric arbor	A medium dendritic field with assymetric arbor.
http://purl.obolibrary.org/obo/CP_0001074	medium dendritic field with dense arbor density	A medium dendritic field with dense arbor density.
http://purl.obolibrary.org/obo/CP_0001067	medium dendritic field with medium arbor density	A medium dendritic field with medium arbor density.
http://purl.obolibrary.org/obo/CP_0001068	medium dendritic field with sparse arbor density	A medium dendritic field with sparse arbor density.
http://purl.obolibrary.org/obo/CP_0001047	membranous discs	A part of photoreceptor cells found in the outer segment where photopigments are found. These discs consist of plasma membrane.
http://purl.obolibrary.org/obo/CP_0000123	average length secondary dendrite shaft	A secondary dendrite shaft that is longer than average.
http://purl.obolibrary.org/obo/CP_0000122	long secondary dendrite shaft	A secondary dendrite shaft that is longer than average.
http://purl.obolibrary.org/obo/CP_0001084	small dendritic field with complex dendritic arbor	A small dendritic field with a complex dendritic arbor.
http://purl.obolibrary.org/obo/CP_0001066	small dendritic field with dense arbor density	A small dendritic field with dense arbor density.
http://purl.obolibrary.org/obo/CP_0001064	small dendritic field with medium arbor density	A small dendritic field with medium arbor density.
http://purl.obolibrary.org/obo/CP_0001065	small dendritic field with sparse arbor density	A small dendritic field with sparse arbor density.
http://purl.obolibrary.org/obo/CP_0001083	small dendritic field with straight dendrites	A small dendritic field with straight dendrites.
http://purl.obolibrary.org/obo/CP_0001081	small dendritic field with thin dendrites	A small dendritic field with thin dendrites.
http://purl.obolibrary.org/obo/CP_0001082	small dendritic field with undulate dendrites	A small dendritic field with undulate dendrites.
http://purl.obolibrary.org/obo/CP_0000100	large soma	A soma with a large size.
http://purl.obolibrary.org/obo/CP_0000104	medium to large soma	A soma with a medium to large size.
http://purl.obolibrary.org/obo/CP_0000101	medium soma	A soma with a medium, or normal, size.
http://purl.obolibrary.org/obo/CP_0000102	small soma	A soma with a small size.
http://purl.obolibrary.org/obo/CP_0000103	small to medium soma	A soma with a small to medium size.
http://purl.obolibrary.org/obo/CP_0001085	dendrite part	A structure that is part of a neuronal dendrite.
http://purl.obolibrary.org/obo/CP_0001088	decreased axon branching	An axon terminus with decreased branchiness.
http://purl.obolibrary.org/obo/CP_0001087	increased axon branching	An axon terminus with increased branchiness.
http://purl.obolibrary.org/obo/CP_0001050	diffuse axonal branches	Axonal branches that are diffused.
http://purl.obolibrary.org/obo/CP_0001059	straight dendrites	Dendrites that are relatively straight.
http://purl.obolibrary.org/obo/CP_0001056	thick dendrites	Dendrites that are relatively thick.
http://purl.obolibrary.org/obo/CP_0001057	thin dendrites	Dendrites that are relatively thin.
http://purl.obolibrary.org/obo/CP_0001052	crescent-shaped dendrites	Dendrites that have a distinctive crescent shape.
http://purl.obolibrary.org/obo/CP_0001051	curly dendrites	Dendrites that have a distinctive curly shape.
http://purl.obolibrary.org/obo/CP_0001058	undulate dendrites	Dendrites that have a relatively undulate shape.
http://purl.obolibrary.org/obo/CP_0001063	conspicuous dendritic contacts	Dendritic contacts that are relatively conspicuous.
http://purl.obolibrary.org/obo/CP_0001048	plasma membrane-bound membranous discs	Membranous discs that are bound to the plasma membrane.
http://purl.obolibrary.org/obo/CP_0001049	narrowly stratified post-synaptic terminals	Post-synaptic terminals that stratify narrowly.
http://purl.obolibrary.org/obo/CP_0001034	dendritic arbor	The tree-like area constituted by the dendrites of a neuron.

Oct 17 '22 11:10 shawntanzk

Re CP terms:

Some might be added as compound terms with existing PATO terms (has_part some (dendrite and has_characteristic some curly))

Some may correspond to cell components for which already have GO terms for - e.g. membranous discs

For the rest - maybe keep reference to these qualities as descriptive text in defs for now and make a PATO ticket to discuss which are worth adding there?

Oct 17 '22 12:10 dosumis

I think some of the defs might not be right - eg narrow field retinal amacrine cell (def: An amicrine that stratifies dendrites at two and only two locations.)

Furthermore some logical definitions need to be relooked at too eg narrow field retinal amacrine cell doesn't seem to be reasoned or asserted as an amacrine cell -> I'm guessing retina horizontal cell should be an amacrine cell? need to do research.

There are also unsats:

bistratified retinal ganglion cell SubClassOf Nothing

bistratified retinal ganglion cell SubClassOf bistratified cell
- bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
  - CNS neuron (sensu Vertebrata) SubClassOf neuron
    - neuron SubClassOf capable of some transmission of nerve impulse
      - capable of Domain independent continuant
  - bilateral SubClassOf position
    - position SubClassOf physical quality
      - physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
independent continuant DisjointWith specifically dependent continuant

G3 retinal ganglion cell SubClassOf Nothing

G3 retinal ganglion cell SubClassOf bistratified retinal ganglion cell
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

retinal ganglion cell D2 SubClassOf Nothing

retinal ganglion cell D2 EquivalentTo bistratified retinal ganglion cell and (has quality some CP_0001070) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

retinal ganglion cell D1 SubClassOf Nothing

retinal ganglion cell D1 SubClassOf bistratified retinal ganglion cell
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

G7 retinal ganglion cell SubClassOf Nothing

G7 retinal ganglion cell SubClassOf bistratified retinal ganglion cell
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

M13 retinal ganglion cell SubClassOf Nothing

M13 retinal ganglion cell SubClassOf bistratified retinal ganglion cell
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

M12 retinal ganglion cell SubClassOf Nothing

M12 retinal ganglion cell SubClassOf bistratified retinal ganglion cell
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

M14 retinal ganglion cell SubClassOf Nothing

M14 retinal ganglion cell EquivalentTo bistratified retinal ganglion cell and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layers S4 or S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3)
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

M11 retinal ganglion cell SubClassOf Nothing

M11 retinal ganglion cell SubClassOf bistratified retinal ganglion cell
- bistratified retinal ganglion cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

A2 amacrine Cell SubClassOf Nothing

A2 amacrine Cell EquivalentTo bistratified retinal amacrine cell and (has quality some CP_0000107) and (has postsynaptic terminal in some sublaminar layer S5) and (has postsynaptic terminal in some sublaminar layers S1 or S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
- bistratified retinal amacrine cell SubClassOf bistratified cell
  - bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)
    - bilateral SubClassOf position
      - position SubClassOf physical quality
        
        physical quality SubClassOf physical object quality
        
        physical object quality SubClassOf quality
        
        quality SubClassOf specifically dependent continuant
    - CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)
      - develops from SubPropertyOf: has developmental contribution from
        
        has developmental contribution from Domain anatomical entity
        
        anatomical entity SubClassOf biological entity
        
        biological entity SubClassOf independent continuant
independent continuant DisjointWith specifically dependent continuant

Axiom Impact

Axioms used 10 times

bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085) [cl.owl]
quality SubClassOf specifically dependent continuant [merged_import.owl]
position SubClassOf physical quality [merged_import.owl]
bilateral SubClassOf position [merged_import.owl]
physical quality SubClassOf physical object quality [merged_import.owl]
physical object quality SubClassOf quality [merged_import.owl]
independent continuant DisjointWith specifically dependent continuant [merged_import.owl]

Axioms used 9 times

anatomical entity SubClassOf biological entity [merged_import.owl]
biological entity SubClassOf independent continuant [merged_import.owl]
CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata) [cl.owl]
bistratified retinal ganglion cell SubClassOf bistratified cell [cl.owl]
develops from SubPropertyOf: has developmental contribution from [merged_import.owl]
has developmental contribution from Domain anatomical entity [merged_import.owl]

Axioms used 1 times

retinal ganglion cell D2 EquivalentTo bistratified retinal ganglion cell and (has quality some CP_0001070) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5) [cl.owl]
M14 retinal ganglion cell EquivalentTo bistratified retinal ganglion cell and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layers S4 or S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) [cl.owl]
A2 amacrine Cell EquivalentTo bistratified retinal amacrine cell and (has quality some CP_0000107) and (has postsynaptic terminal in some sublaminar layer S5) and (has postsynaptic terminal in some sublaminar layers S1 or S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S5) [cl.owl]
CNS neuron (sensu Vertebrata) SubClassOf neuron [cl.owl]
neuron SubClassOf capable of some transmission of nerve impulse [cl.owl]
G3 retinal ganglion cell SubClassOf bistratified retinal ganglion cell [cl.owl]
G7 retinal ganglion cell SubClassOf bistratified retinal ganglion cell [cl.owl]
retinal ganglion cell D1 SubClassOf bistratified retinal ganglion cell [cl.owl]
M11 retinal ganglion cell SubClassOf bistratified retinal ganglion cell [cl.owl]
M12 retinal ganglion cell SubClassOf bistratified retinal ganglion cell [cl.owl]
M13 retinal ganglion cell SubClassOf bistratified retinal ganglion cell [cl.owl]
bistratified retinal amacrine cell SubClassOf bistratified cell [cl.owl]
capable of Domain independent continuant [merged_import.owl]

Ontologies used:

merged_import.owl (http://purl.obolibrary.org/obo/cl/imports/merged_import.owl)
cl.owl (http://purl.obolibrary.org/obo/cl.owl)

also, there's no xrefs on any of them atm - @addiehl & @patrick-lloyd-ray do you have any provenance of where these came from? (eg what papers they were curated from etc.)

Oct 17 '22 14:10 shawntanzk

unsat caused by:

bistratified cell EquivalentTo CNS neuron (sensu Vertebrata) and bilateral and (has part some CP_0001085)

equivalent class doesn't quite make sense to me:

'CNS neuron (sensu Vertebrata)'
 and bilateral
 and ('has part' some 'dendrite part')

bilateral needs a relation, but I don't understand why its there? The dendrite part doesn't make sense to me too.

I think we need a pato term bistratified and make and equivalent class that way

Oct 17 '22 15:10 shawntanzk

do you have any provenance of where these came from? (eg what papers they were curated from etc.)

I believe I have all the details stored on an old drive somewhere. Let me see if I can dig it out.

Oct 17 '22 17:10 patrick-lloyd-ray

I also have a bunch of info, including papers, etc. that I can share

Oct 17 '22 18:10 addiehl

Here's a set of papers that were probably used retinal-papers.zip

Oct 17 '22 18:10 addiehl

And here's the outline of the paper that Patrick had planned to write Retinal Neuron Cell Ontology.docx

Oct 17 '22 18:10 addiehl

Thanks, @addiehl.

Oct 17 '22 20:10 patrick-lloyd-ray

Some might be added as compound terms with existing PATO terms

Just to make sure, I'll try an example here:

"asymmetric dendritic arbor", currently is equivalent to

'dendrite part'
 and (has_quality some asymmetrical)

"dendrite part" (also a CP term), current is subclassOf dendrite (which I think is wrong, should be part_of instead)

so something like "asymmetric bistratified amacrine cell" should have a subclassOf:

has_quality some ((part_of some dendrite) and has_quality some asymmetrical)

not 100% my expression is right there tbh

Oct 18 '22 13:10 shawntanzk

I think we need a pato term bistratified and make and equivalent class that way

Yes, these were done ages ago before we had good patterns for this type of thing, so this seems like the right approach to me given how these are characterized now.

Relatedly, I think the 'bilateral' is the incorrect annotation that causes the unsats (from a glance). I have some time later this week where I can really take a closer look at this. I'm sure many of the definitions (textual and logical) need reworking, too.

Oct 18 '22 20:10 patrick-lloyd-ray

I think the 'bilateral' is the incorrect annotation that causes the unsats (from a glance).

Yups - changing bilateral to a PATO term using 'has characteristic' or something should solve this.

I'm sure many of the definitions (textual and logical) need reworking

Yeah, I'm trying to work on them, maybe lets coordinate, let me figure out some stuff and we can work together on a shared sheet or something. Thanks!

Oct 19 '22 10:10 shawntanzk

lets coordinate, let me figure out some stuff and we can work together on a shared sheet or something.

Absolutely great idea -- let's do it.

Oct 19 '22 15:10 patrick-lloyd-ray

@patrick-lloyd-ray - I've moved over what I'm doing to sheets https://docs.google.com/spreadsheets/d/1i7QNpfSN_u9T6A-07w3OmcFQtQmv7avU6zXuufhdvak/edit?usp=sharing. Here's my plans atm (please do suggest alternative ways if you have any)

Get PMIDs for all the cell types
Go through textual definitions to make sure they are all unique (a bit of controversy as I know at times this isn't possible at more granular level, but I would like to try to still do so)
Based on textual definitions, go through the logical definitions and see how to fix each one (slow process but I can't see how to deal with it otherwise) 3b) if CP terms need to be used still, we can add them to PATO as part of step 3
CP terms are on that sheet in another tab, plan is to put what we will use for expression, and we can replace accordingly

Oct 20 '22 08:10 shawntanzk

not 100% my expression is right there tbh

Correct expression should be:

has_part some (dendrite and has_quality some asymmetrical)

Oct 20 '22 15:10 shawntanzk

Not sure whats the best way to represent dendritic field, which from my understanding is the area which a neurons dendrites cover (correct me if I'm wrong). Not sure if it belongs as a term in CL? (eg uberon has space represented too). Would like input on this @dosumis

Oct 20 '22 15:10 shawntanzk

Have you looked at the Neuron Phenotype Ontology, published in March 2022 for help with the neuron phenotype CP terms?

Oct 20 '22 19:10 addiehl

Have you looked at the Neuron Phenotype Ontology, published in March 2022 for help with the neuron phenotype CP terms?

@tgbugs might be a good idea to coordinate getting NPO stuff into PATO/CL? Related to https://github.com/obophenotype/cell-ontology/issues/1657

Oct 20 '22 19:10 shawntanzk

@shawntanzk I went through the definitions and references and I think 1 and 2 from your list are done (subject to revision, of course). Now, the fun part.

Not sure whats the best way to represent dendritic field, which from my understanding is the area which a neurons dendrites cover (correct me if I'm wrong).

Yeah, that's what it means and it's a weird modeling problem. I think it's a site (BFO:0000029) or a three-dimensional spatial region (BFO:0000028) that is bounded by a dendritic arbor, at least that's my intuition tells me, but maybe I'm overlooking something. Also, I'm not sure if 'site' is used very often. So as a first-pass, dendritic field would be either: "A site bounded by a dendritic arbor" or "A three-dimensional spatial region that is bounded by a dendritic arbor."

But the good news is that all we need for now is large, medium, and small to express what's in the sheet, I think.

Oct 27 '22 20:10 patrick-lloyd-ray

"A three-dimensional spatial region that is bounded by a dendritic arbor."

I think this sounds good - I guess it would be an immaterial space in which dendrite arbor are located in then? In which case it probably belongs in uberon (I think its worth making a term for this). I guess the axiomatization would look something like:

'has characteristic' some ('dendritic field' and 'has characteristic' some large)

but on experimenting, it shows up unsat cause of: Screenshot 2022-10-28 at 08 51 40

Oct 28 '22 07:10 shawntanzk

I wonder if we can just conflate dendritic arbor and dendritic field. Was talking to @dosumis about wanting to model dendritic field as an anatomical space and the issues, but he mentioned its probably easier to handle it as something material. since dendritric arbor covers the dendritic field (again correct me if im wrong) - can we just assume they both map to dendrite tree (http://amigo.geneontology.org/amigo/term/GO:0097447)

Nov 01 '22 15:11 shawntanzk

but on experimenting, it shows up unsat cause of:

Ack, seems obvious that would happen now that I see it. I didn't think that through very well.

I agree with @dosumis that the problem is that the space (dendritic field) is large/medium/small in virtue of the material entity (dendritic arbor) being large/medium/small, so the characteristic should be on the arbor itself, not the field bounded by it. I don't know if this is getting close to a "shadow," though, but we definitely need to capture this information for these types of cells.

Nov 01 '22 17:11 patrick-lloyd-ray

I think what you actually want is a term for 'dendritic field size' - which would be a size quality (subclass of PATO:0001710 '3-D extent') that could inhere in the neuron or a dendrite of the neuron.

This could be defined as something like "A 3-D extent quality inhering in a neuron or one of its dendrites by virtue of the amount of 3-dimensional space required to contain all of its dendritic processes.". Then 'large dendritic field size' would be 'dendritic field size' and 'increased in magnitude relative to' some 'normal' etc.

Nov 01 '22 17:11 Clare72

Could I double check that this expression works:

http://purl.obolibrary.org/obo/CP_0001064 has the definition A small dendritic field with medium arbor density. I'm trying to replace it with:

('has characteristic' some ('dendritic tree' and 'area density' and normal)) 
and ('has characteristic' some ('dendritic field size' and ('decreased in magnitude relative to' some normal)))

Nov 04 '22 15:11 shawntanzk

('has characteristic' some ('dendritic tree' and 'area density' and normal))

This doesn't look right to me, isn't 'dendritic tree' a part of the neuron, rather than a quality? I think it should be something like:

('has part' some ('dendritic tree' and ('has characteristic' some ('area density' and ('has modifier' some normal)))))

Nov 04 '22 15:11 Clare72

('has part' some ('dendritic tree' and ('has characteristic' some ('area density' and ('has modifier' some normal)))))

This makes ALOT more sense, thanks so much @Clare72 :)

Nov 04 '22 15:11 shawntanzk

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
Version IRI: http://purl.obolibrary.org/obo/cl/releases/2022-11-10/cl-simple.owl
Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
Version IRI: http://purl.obolibrary.org/obo/cl/releases/2022-11-10/cl-simple.owl
Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

CL_0003001 `http://purl.obolibrary.org/obo/CL_0003001`

Added

CL_0003001 has_exact_synonym "retinal ganglion D cell"
CL_0003001 id "CL:0003001"
CL_0003001 has_obo_namespace "cell"
CL_0003001 label "bistratified retinal ganglion cell"
CL_0003001 definition "A retinal ganglion cell that has dendrites stratified in two layers of the inner-plexiform layer."
Class: CL_0003001
CL_0003001 SubClassOf CL_0004247
CL_0003001 SubClassOf retinal ganglion cell

CL_0003002 `http://purl.obolibrary.org/obo/CL_0003002`

Added

CL_0003002 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003002 label "G1 retinal ganglion cell"
CL_0003002 id "CL:0003002"
CL_0003002 has_obo_namespace "cell"
CL_0003002 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003002 definition "A retinal ganglion cell that has a small dendritic field and a medium dendritic arbor with post sympatic terminals in sublaminar layer S3."
- database_cross_reference "PMID:11978858"
Class: CL_0003002
CL_0003002 SubClassOf retinal ganglion cell

CL_0003003 `http://purl.obolibrary.org/obo/CL_0003003`

Added

CL_0003003 definition "A mono-stratified retinal ganglion cell that has a small dendritic field and a sparse dendritic arbor with post sympatic terminals in sublaminar layer S3."
- database_cross_reference "PMID:11978858"
CL_0003003 label "G2 retinal ganglion cell"
CL_0003003 has_obo_namespace "cell"
CL_0003003 id "CL:0003003"
CL_0003003 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003003 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003003
CL_0003003 SubClassOf retinal ganglion cell

CL_0003004 `http://purl.obolibrary.org/obo/CL_0003004`

Added

CL_0003004 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003004 has_obo_namespace "cell"
CL_0003004 label "G3 retinal ganglion cell"
CL_0003004 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003004 definition "A bistratified retinal ganglion cell that has a small dendritic field with sparse density that terminates at the intersection of the S4-S5 sublaminar level, and a second dendrite field that is medium in size and degree of arborization that terminates in sublaminar layer S2."
- database_cross_reference "PMID:11978858"
CL_0003004 comment "is_a bistratified retinal ganglion cell S4-S5 dendrite field having (small dendritic field, sparse density) and second dendrite field having (medium, meduim)"
CL_0003004 id "CL:0003004"
Class: CL_0003004
CL_0003004 SubClassOf CL_0003001

CL_0003005 `http://purl.obolibrary.org/obo/CL_0003005`

Added

CL_0003005 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003005 definition "A mono-stratified retinal ganglion cell that has a small dendritic field and dense dendritic arbor."
CL_0003005 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003005 id "CL:0003005"
CL_0003005 has_obo_namespace "cell"
CL_0003005 comment "Masland nomenclature PMID:11978858"
CL_0003005 label "G4 retinal ganglion cell"
Class: CL_0003005
CL_0003005 SubClassOf retinal ganglion cell

CL_0003006 `http://purl.obolibrary.org/obo/CL_0003006`

Added

CL_0003006 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003006 has_obo_namespace "cell"
CL_0003006 label "G4-ON retinal ganglion cell"
CL_0003006 id "CL:0003006"
CL_0003006 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003006 definition "A G4 retinal ganglion cell that has post sympatic terminals in sublaminar layers S3 and S4."
- database_cross_reference "PMID:11978858"
Class: CL_0003006
CL_0003006 SubClassOf CL_0003005

CL_0003007 `http://purl.obolibrary.org/obo/CL_0003007`

Added

CL_0003007 definition "A G4 retinal ganglion cell that has post sympatic terminals in sublaminar layers S2 and S3."
CL_0003007 has_obo_namespace "cell"
CL_0003007 comment "Masland nomenclature PMID:11978858"
CL_0003007 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003007 id "CL:0003007"
CL_0003007 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003007 label "G4-OFF retinal ganglion cell"
Class: CL_0003007
CL_0003007 SubClassOf CL_0003005

CL_0003008 `http://purl.obolibrary.org/obo/CL_0003008`

Added

CL_0003008 id "CL:0003008"
CL_0003008 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003008 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003008 label "G5 retinal ganglion cell"
CL_0003008 has_obo_namespace "cell"
CL_0003008 definition "A mono-stratified retinal ganglion cell that has a medium dendritic field and a medium dendritic arbor with post sympatic terminals in sublaminar layer S2."
- database_cross_reference "PMID:11978858"
Class: CL_0003008
CL_0003008 SubClassOf retinal ganglion cell

CL_0003009 `http://purl.obolibrary.org/obo/CL_0003009`

Added

CL_0003009 id "CL:0003009"
CL_0003009 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003009 has_obo_namespace "cell"
CL_0003009 label "G6 retinal ganglion cell"
CL_0003009 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003009 definition "A mono-stratified retinal ganglion cell that has a medium dendritic field and a sparse dendritic arbor with post sympatic terminals in sublaminar layer S4 and S5."
- database_cross_reference "PMID:11978858"
Class: CL_0003009
CL_0003009 SubClassOf retinal ganglion cell

CL_0003010 `http://purl.obolibrary.org/obo/CL_0003010`

Added

CL_0003010 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003010 id "CL:0003010"
CL_0003010 definition "A bistratified retinal ganglion cell that has a dendrite filed that terminates in sublaminar layer S2 and a second dendrite field that terminates in sublaminar layer S4."
- database_cross_reference "PMID:11978858"
CL_0003010 has_exact_synonym "ON-OFF DS"
CL_0003010 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003010 label "G7 retinal ganglion cell"
CL_0003010 has_obo_namespace "cell"
Class: CL_0003010
CL_0003010 SubClassOf CL_0003001

CL_0003011 `http://purl.obolibrary.org/obo/CL_0003011`

Added

CL_0003011 label "G8 retinal ganglion cell"
CL_0003011 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003011 definition "A mono-stratified retinal ganglion cell that has a large dendritic field and a sparse dendritic arbor with post sympatic terminals in sublaminar layer S4."
- database_cross_reference "PMID:11978858"
CL_0003011 id "CL:0003011"
CL_0003011 has_obo_namespace "cell"
CL_0003011 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003011
CL_0003011 SubClassOf retinal ganglion cell

CL_0003012 `http://purl.obolibrary.org/obo/CL_0003012`

Added

CL_0003012 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003012 label "G9 retinal ganglion cell"
CL_0003012 definition "A mono-stratified retinal ganglion cell that has a large dendritic field and a medium dendritic arbor with post sympatic terminals in sublaminar layer S1 and S2."
- database_cross_reference "PMID:11978858"
CL_0003012 has_obo_namespace "cell"
CL_0003012 id "CL:0003012"
CL_0003012 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003012
CL_0003012 SubClassOf retinal ganglion cell

CL_0003013 `http://purl.obolibrary.org/obo/CL_0003013`

Added

CL_0003013 has_obo_namespace "cell"
CL_0003013 comment "Capable of ON directional sensitivity."
CL_0003013 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
CL_0003013 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003013 label "G10 retinal ganglion cell"
CL_0003013 definition "A mono-stratified retinal ganglion cell that has a large dendritic field, a medium dendritic arbor, and a long secondary dendrite shaft with post sympatic terminals in sublaminar layer S4."
- database_cross_reference "PMID:11978858"
CL_0003013 id "CL:0003013"
Class: CL_0003013
CL_0003013 SubClassOf retinal ganglion cell

CL_0003014 `http://purl.obolibrary.org/obo/CL_0003014`

Added

CL_0003014 definition "A mono-stratified retinal ganglion cell that has a large dendritic field, a medium dendritic arbor, and a medium length secondary dendrite shaft."
- database_cross_reference "PMID:11978858"
CL_0003014 id "CL:0003014"
CL_0003014 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
CL_0003014 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003014 label "G11 retinal ganglion cell"
CL_0003014 has_obo_namespace "cell"
CL_0003014 comment "Is capable of brisk transient currents."
Class: CL_0003014
CL_0003014 SubClassOf retinal ganglion cell

CL_0003015 `http://purl.obolibrary.org/obo/CL_0003015`

Added

CL_0003015 has_obo_namespace "cell"
CL_0003015 definition "A G11 retinal ganglion cell that has post synaptic terminals in sublaminar layer S4."
- database_cross_reference "PMID:11978858"
CL_0003015 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003015 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
CL_0003015 label "G11-ON retinal ganglion cell"
CL_0003015 id "CL:0003015"
Class: CL_0003015
CL_0003015 SubClassOf CL_0003014

CL_0003016 `http://purl.obolibrary.org/obo/CL_0003016`

Added

CL_0003016 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003016 label "G11-OFF retinal ganglion cell"
CL_0003016 definition "A G11 retinal ganglion cell that has post synaptic terminals in sublaminar layer S2."
- database_cross_reference "PMID:11978858"
CL_0003016 id "CL:0003016"
CL_0003016 has_obo_namespace "cell"
CL_0003016 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003016
CL_0003016 SubClassOf CL_0003014

CL_0003017 `http://purl.obolibrary.org/obo/CL_0003017`

Added

CL_0003017 definition "A retinal ganglion B cell that has post synaptic terminals in S2."
- database_cross_reference "PMID:12209831"
CL_0003017 label "retinal ganglion cell B3 outer"
CL_0003017 has_obo_namespace "cell"
CL_0003017 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003017 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003017 id "CL:0003017"
Class: CL_0003017
CL_0003017 SubClassOf CL_0004183

CL_0003018 `http://purl.obolibrary.org/obo/CL_0003018`

Added

CL_0003018 definition "A retinal ganglion B3 cell with dentrites terminating in S4."
- database_cross_reference "PMID:12209831"
CL_0003018 label "retinal ganglion cell B3 inner"
CL_0003018 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003018 has_obo_namespace "cell"
CL_0003018 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003018 database_cross_reference "BAMS:1010"
CL_0003018 id "CL:0003018"
Class: CL_0003018
CL_0003018 SubClassOf CL_0004183

CL_0003020 `http://purl.obolibrary.org/obo/CL_0003020`

Added

CL_0003020 has_obo_namespace "cell"
CL_0003020 id "CL:0003020"
CL_0003020 definition "A retinal ganglion cell C that has post-synaptic terminals in S2."
- database_cross_reference "PMID:12209831"
CL_0003020 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003020 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003020 label "retinal ganglion cell C outer"
Class: CL_0003020
CL_0003020 SubClassOf CL_0004116

CL_0003021 `http://purl.obolibrary.org/obo/CL_0003021`

Added

CL_0003021 label "retinal ganglion cell C4"
CL_0003021 definition "A retinal ganglion cell C outer that has a medium dendritic field and a dense dendritic arbor."
- database_cross_reference "PMID:12209831"
CL_0003021 has_obo_namespace "cell"
CL_0003021 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003021 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003021 id "CL:0003021"
Class: CL_0003021
CL_0003021 SubClassOf CL_0003020

CL_0003022 `http://purl.obolibrary.org/obo/CL_0003022`

Added

CL_0003022 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003022 id "CL:0003022"
CL_0003022 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003022 label "retinal ganglion cell C5"
CL_0003022 has_obo_namespace "cell"
CL_0003022 definition "A retinal ganglion cell C outer that has medium dendritic density and field size."
- database_cross_reference "PMID:12209831"
Class: CL_0003022
CL_0003022 SubClassOf CL_0003020

CL_0003023 `http://purl.obolibrary.org/obo/CL_0003023`

Added

CL_0003023 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003023 label "retinal ganglion cell C6"
CL_0003023 has_obo_namespace "cell"
CL_0003023 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003023 id "CL:0003023"
CL_0003023 definition "A retinal ganglion cell C outer that has dense dendritic diversity."
- database_cross_reference "PMID:12209831"
Class: CL_0003023
CL_0003023 SubClassOf CL_0003020

CL_0003024 `http://purl.obolibrary.org/obo/CL_0003024`

Added

CL_0003024 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003024 label "retinal ganglion cell C inner"
CL_0003024 has_obo_namespace "cell"
CL_0003024 id "CL:0003024"
CL_0003024 definition "A retinal ganglion cell medium cell bodies and large dendritic fields."
- database_cross_reference "PMID:12209831"
CL_0003024 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003024
CL_0003024 SubClassOf CL_0004116

CL_0003025 `http://purl.obolibrary.org/obo/CL_0003025`

Added

CL_0003025 id "CL:0003025"
CL_0003025 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003025 has_related_synonym "epsilon"
CL_0003025 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003025 definition "A retinal ganglion cell C inner that has sparse dendritic density, and large dendritic field."
- database_cross_reference "PMID:12209831"
CL_0003025 has_obo_namespace "cell"
CL_0003025 label "retinal ganglion cell C3"
Class: CL_0003025
CL_0003025 SubClassOf CL_0003024

CL_0003026 `http://purl.obolibrary.org/obo/CL_0003026`

Added

CL_0003026 label "retinal ganglion cell D1"
CL_0003026 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003026 has_obo_namespace "cell"
CL_0003026 id "CL:0003026"
CL_0003026 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003026 definition "A bistratified retinal ganglion cell that has a small dendrite fields with a sparse dendrite arbor terminating in S2 and S3."
- database_cross_reference "PMID:12209831"
Class: CL_0003026
CL_0003026 SubClassOf CL_0003001

CL_0003027 `http://purl.obolibrary.org/obo/CL_0003027`

Added

CL_0003027 id "CL:0003027"
CL_0003027 has_related_synonym "ON-OFF direction selective"
CL_0003027 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003027 label "retinal ganglion cell D2"
CL_0003027 has_related_synonym "iota cell"
CL_0003027 has_obo_namespace "cell"
CL_0003027 definition "A bistratified retinal ganglion cell D cell that has medium dendritic arbor and a large dendritic field that terminates in S2 and S4."
- database_cross_reference "PMID:12209831"
CL_0003027 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003027
CL_0003027 SubClassOf CL_0003010

CL_0003028 `http://purl.obolibrary.org/obo/CL_0003028`

Added

CL_0003028 definition "A monostratified retinal ganglion cell that has a small dendrite field with a dense dendrite arbor with post synaptic terminals in sublaminer layer S4."
- database_cross_reference "PMID:16626866"^^string
CL_0003028 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003028 id "CL:0003028"
CL_0003028 label "M1 retinal ganglion cell"
CL_0003028 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003028 has_obo_namespace "cell"
Class: CL_0003028
CL_0003028 SubClassOf CL_0003005

CL_0003029 `http://purl.obolibrary.org/obo/CL_0003029`

Added

CL_0003029 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003029 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003029 definition "A monostratified retinal ganglion cell that has a small soma, a small dendrite field with a dense dendrite arbor, and post synaptic terminals in sublaminer layer S2 and S3."
- database_cross_reference "PMID:16626866"^^string
CL_0003029 label "M2 retinal ganglion cell"
CL_0003029 has_obo_namespace "cell"
CL_0003029 id "CL:0003029"
Class: CL_0003029
CL_0003029 SubClassOf CL_0003007

CL_0003030 `http://purl.obolibrary.org/obo/CL_0003030`

Added

CL_0003030 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003030 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003030 definition "A monostratified retinal ganglion cell that has a medium soma and a small dendrite field."
- database_cross_reference "PMID:16626866"^^string
CL_0003030 has_obo_namespace "cell"
CL_0003030 label "M3 retinal ganglion cell"
CL_0003030 id "CL:0003030"
Class: CL_0003030
CL_0003030 SubClassOf retinal ganglion cell

CL_0003031 `http://purl.obolibrary.org/obo/CL_0003031`

Added

CL_0003031 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003031 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003031 id "CL:0003031"
CL_0003031 definition "A monostratified retinal ganglion cell that has post synaptic terminals in sublaminar layer S4."
- database_cross_reference "PMID:16626866"^^string
CL_0003031 label "M3-ON retinal ganglion cell"
CL_0003031 has_obo_namespace "cell"
Class: CL_0003031
CL_0003031 SubClassOf CL_0003030

CL_0003032 `http://purl.obolibrary.org/obo/CL_0003032`

Added

CL_0003032 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003032 label "M3-OFF retinal ganglion cell"
CL_0003032 definition "A monostratified retinal ganglion cell that has post synaptic terminals in sublaminar layer S2."
- database_cross_reference "PMID:16626866"^^string
CL_0003032 has_obo_namespace "cell"
CL_0003032 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003032 id "CL:0003032"
Class: CL_0003032
CL_0003032 SubClassOf CL_0003030

CL_0003033 `http://purl.obolibrary.org/obo/CL_0003033`

Added

CL_0003033 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003033 id "CL:0003033"
CL_0003033 has_obo_namespace "cell"
CL_0003033 definition "A monostratified retinal ganglion cell that has a large soma, a medium dendritic field with post synaptic terminals in sublaminar layer S3."
- database_cross_reference "PMID:16626866"^^string
CL_0003033 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003033 label "M4 retinal ganglion cell"
Class: CL_0003033
CL_0003033 SubClassOf retinal ganglion cell

CL_0003034 `http://purl.obolibrary.org/obo/CL_0003034`

Added

CL_0003034 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003034 definition "A monostratified retinal ganglion cell that has a small soma, an assymetric dendritic field with post synaptic terminals in sublaminar layer S3."
- database_cross_reference "PMID:16626866"^^string
CL_0003034 label "M5 retinal ganglion cell"
CL_0003034 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003034 id "CL:0003034"
CL_0003034 has_obo_namespace "cell"
Class: CL_0003034
CL_0003034 SubClassOf retinal ganglion cell

CL_0003035 `http://purl.obolibrary.org/obo/CL_0003035`

Added

CL_0003035 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003035 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003035 definition "A monostratified retinal ganglion cell that contains opsin."
- database_cross_reference "PMID:16626866"^^string
CL_0003035 label "M6 retinal ganglion cell"
CL_0003035 id "CL:0003035"
CL_0003035 has_obo_namespace "cell"
Class: CL_0003035
CL_0003035 SubClassOf retinal ganglion cell

CL_0003036 `http://purl.obolibrary.org/obo/CL_0003036`

Added

CL_0003036 id "CL:0003036"
CL_0003036 has_obo_namespace "cell"
CL_0003036 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003036 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003036 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with medium dendritic arbor."
- database_cross_reference "PMID:16626866"^^string
CL_0003036 label "M7 retinal ganglion cell"
Class: CL_0003036
CL_0003036 SubClassOf CL_0004117

CL_0003037 `http://purl.obolibrary.org/obo/CL_0003037`

Added

CL_0003037 has_obo_namespace "cell"
CL_0003037 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003037 id "CL:0003037"
CL_0003037 definition "An M7 retinal ganglion cells with synaptic terminals in S4."
- database_cross_reference "PMID:16626866"^^string
CL_0003037 label "M7-ON retinal ganglion cell"
CL_0003037 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003037
CL_0003037 SubClassOf CL_0003036

CL_0003038 `http://purl.obolibrary.org/obo/CL_0003038`

Added

CL_0003038 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003038 definition "An M7 retinal ganglion cells with synaptic terminals in S2."
- database_cross_reference "PMID:16626866"^^string
CL_0003038 label "M7-OFF retinal ganglion cell"
CL_0003038 id "CL:0003038"
CL_0003038 has_obo_namespace "cell"
CL_0003038 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003038
CL_0003038 SubClassOf CL_0003036

CL_0003039 `http://purl.obolibrary.org/obo/CL_0003039`

Added

CL_0003039 definition "A monostratified retinal ganglion cell with large soma and medium dendritic field, with dense dendritic arbor."
- database_cross_reference "PMID:16626866"^^string
CL_0003039 id "CL:0003039"
CL_0003039 label "M8 retinal ganglion cell"
CL_0003039 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003039 has_obo_namespace "cell"
CL_0003039 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003039
CL_0003039 SubClassOf retinal ganglion cell

CL_0003040 `http://purl.obolibrary.org/obo/CL_0003040`

Added

CL_0003040 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with medium dendritic arbor"
- database_cross_reference "PMID:16626866"^^string
CL_0003040 id "CL:0003040"
CL_0003040 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003040 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003040 label "M9 retinal ganglion cell"
CL_0003040 has_obo_namespace "cell"
Class: CL_0003040
CL_0003040 SubClassOf retinal ganglion cell

CL_0003041 `http://purl.obolibrary.org/obo/CL_0003041`

Added

CL_0003041 has_obo_namespace "cell"
CL_0003041 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003041 label "M9-ON retinal ganglion cell"
CL_0003041 id "CL:0003041"
CL_0003041 definition "An M9 retinal ganglion cells with synaptic terminals in S2."
- database_cross_reference "PMID:16626866"^^string
CL_0003041 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003041
CL_0003041 SubClassOf CL_0003040

CL_0003042 `http://purl.obolibrary.org/obo/CL_0003042`

Added

CL_0003042 definition "An M9 retinal ganglion cells with synaptic terminals in S4."
- database_cross_reference "PMID:16626866"^^string
CL_0003042 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003042 id "CL:0003042"
CL_0003042 label "M9-OFF retinal ganglion cell"
CL_0003042 has_obo_namespace "cell"
CL_0003042 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003042
CL_0003042 SubClassOf CL_0003040

CL_0003043 `http://purl.obolibrary.org/obo/CL_0003043`

Added

CL_0003043 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003043 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with dense dendritic arbor"
- database_cross_reference "PMID:16626866"^^string
CL_0003043 id "CL:0003043"
CL_0003043 has_obo_namespace "cell"
CL_0003043 label "M10 retinal ganglion cell"
CL_0003043 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003043
CL_0003043 SubClassOf CL_0004117

CL_0003044 `http://purl.obolibrary.org/obo/CL_0003044`

Added

CL_0003044 has_obo_namespace "cell"
CL_0003044 definition "A bistratified ganglion cell with small, dense dendritic fields that terminate in S1 and S3."
- database_cross_reference "PMID:16626866"^^string
CL_0003044 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003044 id "CL:0003044"
CL_0003044 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003044 label "M11 retinal ganglion cell"
Class: CL_0003044
CL_0003044 SubClassOf CL_0003001

CL_0003045 `http://purl.obolibrary.org/obo/CL_0003045`

Added

CL_0003045 has_obo_namespace "cell"
CL_0003045 id "CL:0003045"
CL_0003045 definition "A bistratified ganglion cell with larger, assymetric dendritic fields that terminate in S2 and S4."
- database_cross_reference "PMID:16626866"^^string
CL_0003045 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003045 label "M12 retinal ganglion cell"
CL_0003045 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003045
CL_0003045 SubClassOf CL_0003010

CL_0003046 `http://purl.obolibrary.org/obo/CL_0003046`

Added

CL_0003046 id "CL:0003046"
CL_0003046 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003046 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003046 definition "A bistratifed retinal ganglion cell that has smaller, symmetric dendritic fields that terminate in S2 and S4."
- database_cross_reference "PMID:16626866"^^string
CL_0003046 has_obo_namespace "cell"
CL_0003046 label "M13 retinal ganglion cell"
Class: CL_0003046
CL_0003046 SubClassOf CL_0003010

CL_0003047 `http://purl.obolibrary.org/obo/CL_0003047`

Added

CL_0003047 definition "A bistratifed retinal ganglion cell that has smaller, symmetric dendritic fields that terminate in S1 and S4-S5."
- database_cross_reference "PMID:16626866"^^string
CL_0003047 id "CL:0003047"
CL_0003047 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003047 label "M14 retinal ganglion cell"
CL_0003047 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003047 has_obo_namespace "cell"
Class: CL_0003047
CL_0003047 SubClassOf CL_0003001

CL_0003048 `http://purl.obolibrary.org/obo/CL_0003048`

Added

CL_0003048 has_obo_namespace "cell"
CL_0003048 definition "A cone cell that detects longer wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 564-580 nm."
- database_cross_reference "WikipediaVersioned:Cone_cell&oldid=1111888680"
CL_0003048 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003048 label "L cone cell"
CL_0003048 id "CL:0003048"
Class: CL_0003048
CL_0003048 SubClassOf retinal cone cell

CL_0003049 `http://purl.obolibrary.org/obo/CL_0003049`

Added

CL_0003049 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003049 definition "A cone cell that detects medium wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 534-545 nm."
- database_cross_reference "WikipediaVersioned:Cone_cell&oldid=1111888680"
CL_0003049 id "CL:0003049"
CL_0003049 has_obo_namespace "cell"
CL_0003049 label "M cone cell"
Class: CL_0003049
CL_0003049 SubClassOf retinal cone cell

CL_0003050 `http://purl.obolibrary.org/obo/CL_0003050`

Added

CL_0003050 has_obo_namespace "cell"
CL_0003050 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003050 definition "A cone cell that detects short wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 420-440 nm."
- database_cross_reference "WikipediaVersioned:Cone_cell&oldid=1111888680"
CL_0003050 id "CL:0003050"
CL_0003050 label "S cone cell"
Class: CL_0003050
CL_0003050 SubClassOf retinal cone cell

CL_0003051 `http://purl.obolibrary.org/obo/CL_0003051`

Added

CL_0003051 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003051 id "CL:0003051"
CL_0003051 has_obo_namespace "cell"
CL_0003051 label "UV cone cell"
CL_0003051 definition "A cone cell that detects ultraviolet (UV) wavelength light."
Class: CL_0003051
CL_0003051 SubClassOf retinal cone cell

CL_0004001 `http://purl.obolibrary.org/obo/CL_0004001`

Added

CL_0004001 has_obo_namespace "cell"
CL_0004001 definition "An interneuron whose axon stays entirely within the gray matter region where the cell body resides."
CL_0004001 id "CL:0004001"
CL_0004001 comment "Local interneurons form the category of interneurons whose axon stays entirely within the gray matter region where the cell body resides (Swanson, 2003, p. 245; Bota and Swanson, 2007, Fig. 3)."
CL_0004001 label "local interneuron"
CL_0004001 database_cross_reference "BAMS:1002"
Class: CL_0004001
CL_0004001 SubClassOf CNS interneuron

CL_0004115 `http://purl.obolibrary.org/obo/CL_0004115`

Added

CL_0004115 has_obo_namespace "cell"
CL_0004115 definition "A monostratified retinal ganglion cell with small to medium soma and small to medium dendritic field."
- database_cross_reference "PMID:12209831"
CL_0004115 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004115 label "retinal ganglion cell B"
CL_0004115 id "CL:0004115"
CL_0004115 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004115
CL_0004115 SubClassOf retinal ganglion cell

CL_0004116 `http://purl.obolibrary.org/obo/CL_0004116`

Added

CL_0004116 label "retinal ganglion cell C"
CL_0004116 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004116 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004116 comment "Group RGC cells are defined as having small to medium cell bodies and medium to large dendritic fields. Their morphology was more heterogeneous than that of Groups RGA and RGB. We classified cells with a large soma and a large dendritic field as RGA, cells with a small to medium to sized soma and a small to medium to sized dendritic field as RGB, and cells with a small to medium to sized soma but a medium to large dendritic field RGC."
CL_0004116 id "CL:0004116"
CL_0004116 definition "A retinal ganglion with cell medium cell bodies and medium to large dendritic fields."
- database_cross_reference "PMID:12209831"
CL_0004116 has_obo_namespace "cell"
Class: CL_0004116
CL_0004116 SubClassOf retinal ganglion cell

CL_0004117 `http://purl.obolibrary.org/obo/CL_0004117`

Added

CL_0004117 has_exact_synonym "alpha cell"
CL_0004117 comment "This group includes all of the large to bodied/large to field RGCs in the rat .Group RGA cells.have large somata (15 to 39 micrometers in diameter) and large, radially branching dendritic fields (235 to 748 micrometers in diameter), and many exhibit tracer coupling."
CL_0004117 database_cross_reference "BAMS:1009"
CL_0004117 has_obo_namespace "cell"
CL_0004117 label "retinal ganglion cell A"
CL_0004117 id "CL:0004117"
CL_0004117 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004117 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004117 definition "A monostratified retinal ganglion cell with large soma and large dendritic field ."
- database_cross_reference "PMID:12209831"
Class: CL_0004117
CL_0004117 SubClassOf retinal ganglion cell

CL_0004119 `http://purl.obolibrary.org/obo/CL_0004119`

Added

CL_0004119 id "CL:0004119"
CL_0004119 label "retinal ganglion cell B1"
CL_0004119 has_obo_namespace "cell"
CL_0004119 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004119 definition "A retinal ganglion cell B that has medium body size, medium dendritic field and dense dendritic arbor, and has post synaptic terminals in S2."
- database_cross_reference "PMID:12209831"
CL_0004119 database_cross_reference "BAMS:1047"
CL_0004119 has_exact_synonym "retinal ganglion cell B4"
CL_0004119 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004119 comment "Could not distingush between B1 and B4 from paper."
- database_cross_reference "PMID:12209831"
Class: CL_0004119
CL_0004119 SubClassOf CL_0004115

CL_0004120 `http://purl.obolibrary.org/obo/CL_0004120`

Added

CL_0004120 has_exact_synonym "I-2"
CL_0004120 database_cross_reference "BAMS:1045"
CL_0004120 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004120 has_obo_namespace "cell"
CL_0004120 has_exact_synonym "inner alpha retinal ganglion cell"
CL_0004120 has_broad_synonym "type I"
CL_0004120 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004120 label "retinal ganglion cell A1"
CL_0004120 definition "A retinal ganglion A cell found in the retina with large somata, often polygonal in shape. The dendritic fields consist of three to seven stout dendrites that are sparce near soma. Dendrites terminate in S4."
- database_cross_reference "PMID:12209831"
CL_0004120 id "CL:0004120"
Class: CL_0004120
CL_0004120 SubClassOf CL_0004117

CL_0004121 `http://purl.obolibrary.org/obo/CL_0004121`

Added

CL_0004121 has_obo_namespace "cell"
CL_0004121 definition "A retinal ganglion cell B that has a very small but very dense dendritic field, and has post synaptic terminals in S2."
- database_cross_reference "PMID:12209831"
CL_0004121 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004121 database_cross_reference "BAMS:1048"
CL_0004121 label "retinal ganglion cell B2"
CL_0004121 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004121 id "CL:0004121"
Class: CL_0004121
CL_0004121 SubClassOf CL_0003032
CL_0004121 SubClassOf CL_0004115
CL_0004121 SubClassOf CL_0003005

CL_0004124 `http://purl.obolibrary.org/obo/CL_0004124`

Added

CL_0004124 definition "A retinal ganglion cell C inner that has medium dendritic diversity."
- database_cross_reference "PMID:12209831"
CL_0004124 label "retinal ganglion cell C1"
CL_0004124 id "CL:0004124"
CL_0004124 has_obo_namespace "cell"
CL_0004124 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004124 has_related_synonym "ON-direction-selective"
CL_0004124 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004124 has_related_synonym "MTN projecting"
CL_0004124 database_cross_reference "BAMS:1050"
CL_0004124 has_related_synonym "delta"
Class: CL_0004124
CL_0004124 SubClassOf CL_0003024

CL_0004125 `http://purl.obolibrary.org/obo/CL_0004125`

Added

CL_0004125 id "CL:0004125"
CL_0004125 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004125 label "retinal ganglion cell C2 inner"
CL_0004125 definition "A retinal ganglion cell C inner that has dense dendritic diversity."
- database_cross_reference "PMID:12209831"
CL_0004125 has_obo_namespace "cell"
CL_0004125 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004125 database_cross_reference "BAMS:1067"
Class: CL_0004125
CL_0004125 SubClassOf CL_0003024

CL_0004126 `http://purl.obolibrary.org/obo/CL_0004126`

Added

CL_0004126 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004126 has_obo_namespace "cell"
CL_0004126 label "retinal ganglion cell C2 outer"
CL_0004126 definition "A retinal ganglion cell C outer that has symmetrical and dense dendritic dendritic tree with a large dendritic field."
- database_cross_reference "PMID:12209831"
CL_0004126 database_cross_reference "BAMS:1066"
CL_0004126 id "CL:0004126"
CL_0004126 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004126
CL_0004126 SubClassOf CL_0003020

CL_0004137 `http://purl.obolibrary.org/obo/CL_0004137`

Added

CL_0004137 has_obo_namespace "cell"
CL_0004137 id "CL:0004137"
CL_0004137 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004137 label "retinal ganglion cell A2 inner"
CL_0004137 database_cross_reference "BAMS:1061"
CL_0004137 definition "A retinal ganglion A2 cell with dendrites terminating in S4"
- database_cross_reference "PMID:12209831"
CL_0004137 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004137
CL_0004137 SubClassOf CL_0004138

CL_0004138 `http://purl.obolibrary.org/obo/CL_0004138`

Added

CL_0004138 label "retinal ganglion cell A2"
CL_0004138 has_exact_synonym "outer alpha retinal ganglion cell"
CL_0004138 id "CL:0004138"
CL_0004138 has_broad_synonym "type I"
CL_0004138 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004138 definition "A retinal ganglion A cell with dense arbor near soma."
- database_cross_reference "PMID:12209831"
CL_0004138 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004138 has_obo_namespace "cell"
CL_0004138 has_exact_synonym "I-1"
Class: CL_0004138
CL_0004138 SubClassOf CL_0004117

CL_0004139 `http://purl.obolibrary.org/obo/CL_0004139`

Added

CL_0004139 has_obo_namespace "cell"
CL_0004139 id "CL:0004139"
CL_0004139 definition "A retinal ganglion A2 cell with dendrites terminating in S2."
- database_cross_reference "PMID:12209831"
CL_0004139 label "retinal ganglion cell A2 outer"
CL_0004139 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004139 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004139 database_cross_reference "BAMS:1065"
Class: CL_0004139
CL_0004139 SubClassOf CL_0004138

CL_0004161 `http://purl.obolibrary.org/obo/CL_0004161`

Added

CL_0004161 database_cross_reference "BAMS:1028"
- label "MB"
CL_0004161 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004161 definition "A cone whose sensitivity measurements have an average spectral peak of 510 nm. Described in rat."
CL_0004161 present_in_taxon NCBITaxon_9989
CL_0004161 id "CL:0004161"
CL_0004161 has_obo_namespace "cell"
CL_0004161 label "510 nm-cone"
Class: CL_0004161
CL_0004161 SubClassOf CL_0003049

CL_0004162 `http://purl.obolibrary.org/obo/CL_0004162`

Added

CL_0004162 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004162 present_in_taxon NCBITaxon_9989
CL_0004162 definition "A cone whose sensitivity measurements have an average spectral peak of 358.2 nm. Described in rat."
CL_0004162 has_obo_namespace "cell"
CL_0004162 label "360 nm-cone"
CL_0004162 id "CL:0004162"
CL_0004162 database_cross_reference "BAMS:1029"
- label "MB"
CL_0004162 comment "The photopigment curves that provide best fits to...sensitivity measurements have an average spectral peak of 358.2 nm."
Class: CL_0004162
CL_0004162 SubClassOf CL_0003051

CL_0004183 `http://purl.obolibrary.org/obo/CL_0004183`

Added

CL_0004183 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004183 definition "A monostratified retinal ganglion cell with medium soma, sparse dendritic tree, and medium dendritic field."
CL_0004183 database_cross_reference "BAMS:1049"
CL_0004183 id "CL:0004183"
CL_0004183 comment "Sixty to eight neurons with small somata (12 to 24 micrometers in diameter), small dendritic fields (99 to 289 micrometers in diameter), and small axonal diameters (04. to 07. micrometers in diameter) make up Group RGB. We classified cells with a large soma and a large dendritic field as RGA, cells with a small to medium to sized soma and a small to medium to sized dendritic field as RGB, and cells with a small to medium to sized soma but a medium to large dendritic field RGC."
CL_0004183 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004183 has_obo_namespace "cell"
CL_0004183 label "retinal ganglion cell B3"
Class: CL_0004183
CL_0004183 SubClassOf CL_0004115

CL_0004213 `http://purl.obolibrary.org/obo/CL_0004213`

Added

CL_0004213 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004213 has_obo_namespace "cell"
CL_0004213 label "type 3a cone bipolar cell"
CL_0004213 id "CL:0004213"
CL_0004213 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004213 definition "A type of type 3 cone bipolar cell with distinctive curly dendrites."
- database_cross_reference "PMID:19129389"
Class: CL_0004213
CL_0004213 SubClassOf type 3 cone bipolar cell (sensu Mus)

CL_0004214 `http://purl.obolibrary.org/obo/CL_0004214`

Added

CL_0004214 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004214 has_obo_namespace "cell"
CL_0004214 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004214 id "CL:0004214"
CL_0004214 label "type 3b cone bipolar cell"
CL_0004214 definition "A type of type 3 cone bipolar cell with distinctive crescent-shaped dendrites."
- database_cross_reference "PMID:19129389"
Class: CL_0004214
CL_0004214 SubClassOf type 3 cone bipolar cell (sensu Mus)

CL_0004215 `http://purl.obolibrary.org/obo/CL_0004215`

Added

CL_0004215 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004215 has_obo_namespace "cell"
CL_0004215 label "type 5a cone bipolar cell"
CL_0004215 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004215 id "CL:0004215"
CL_0004215 definition "A type 5 cone bipolar cell with narrowly stratified post synaptic terminals."
Class: CL_0004215
CL_0004215 SubClassOf type 5 cone bipolar cell (sensu Mus)

CL_0004216 `http://purl.obolibrary.org/obo/CL_0004216`

Added

CL_0004216 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004216 id "CL:0004216"
CL_0004216 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004216 label "type 5b cone bipolar cell"
CL_0004216 definition "A type 5 cone bipolar cell with diffuse axonal branches."
CL_0004216 has_obo_namespace "cell"
Class: CL_0004216
CL_0004216 SubClassOf type 5 cone bipolar cell (sensu Mus)

CL_0004217 `http://purl.obolibrary.org/obo/CL_0004217`

Added

CL_0004217 definition "A horizontal cell with a large cell body, thick dendrites, and a large dendritic arbor."
- database_cross_reference "PMID:8571130"
CL_0004217 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004217 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004217 has_exact_synonym "A Horizontal Cell"
CL_0004217 has_obo_namespace "cell"
CL_0004217 label "H1 Horizontal Cell"
CL_0004217 id "CL:0004217"
Class: CL_0004217
CL_0004217 SubClassOf retina horizontal cell

CL_0004218 `http://purl.obolibrary.org/obo/CL_0004218`

Added

CL_0004218 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004218 definition "A horizontal cell with a small cell body, thin dendrites, and small dendritic arbor."
- database_cross_reference "PMID:8571130"
CL_0004218 has_exact_synonym "B Horizontal Cell"
CL_0004218 label "H2 Horizontal Cell"
CL_0004218 has_obo_namespace "cell"
CL_0004218 id "CL:0004218"
CL_0004218 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004218
CL_0004218 SubClassOf retina horizontal cell

CL_0004219 `http://purl.obolibrary.org/obo/CL_0004219`

Added

CL_0004219 definition "A bistratifed retinal amacrine cell with a small dendritic field, dendrite stratification in S1-S2, and a second dendrite stratification in S5."
- database_cross_reference "PMID:9620701"
CL_0004219 label "A2 amacrine Cell"
CL_0004219 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004219 has_obo_namespace "cell"
CL_0004219 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004219 id "CL:0004219"
Class: CL_0004219
CL_0004219 SubClassOf CL_0004251
CL_0004219 SubClassOf CL_0004250

CL_0004220 `http://purl.obolibrary.org/obo/CL_0004220`

Added

CL_0004220 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004220 label "flag amacrine Cell"
CL_0004220 id "CL:0004220"
CL_0004220 definition "An amacrine cell with a small, assymteric dendritic field."
- database_cross_reference "PMID:9620701"
CL_0004220 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004220 has_obo_namespace "cell"
Class: CL_0004220
CL_0004220 SubClassOf CL_0004251

CL_0004221 `http://purl.obolibrary.org/obo/CL_0004221`

Added

CL_0004221 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004221 id "CL:0004221"
CL_0004221 has_obo_namespace "cell"
CL_0004221 label "flag A amacrine Cell"
CL_0004221 definition "A flag amacrine cell with post-synaptic terminals in S2 and S3."
- database_cross_reference "PMID:9620701"
CL_0004221 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004221
CL_0004221 SubClassOf CL_0004220

CL_0004222 `http://purl.obolibrary.org/obo/CL_0004222`

Added

CL_0004222 id "CL:0004222"
CL_0004222 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004222 has_obo_namespace "cell"
CL_0004222 label "flag B amacrine cell"
CL_0004222 definition "A flag amacrine cell with post-synaptic terminals in S3, S4, and S5."
- database_cross_reference "PMID:9620701"
CL_0004222 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004222
CL_0004222 SubClassOf CL_0004220

CL_0004223 `http://purl.obolibrary.org/obo/CL_0004223`

Added

CL_0004223 has_obo_namespace "cell"
CL_0004223 id "CL:0004223"
CL_0004223 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004223 label "AB diffuse-1 amacrine cell"
CL_0004223 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004223 definition "A amacrine cell with a small dendritic field and post-synaptic terminals in S1, S2, S3, and S4. AB diffuse-1 amacrine cells have a tent-shaped dendritic arbor and undulate dendrites."
- database_cross_reference "PMID:9620701"
Class: CL_0004223
CL_0004223 SubClassOf retina horizontal cell

CL_0004224 `http://purl.obolibrary.org/obo/CL_0004224`

Added

CL_0004224 id "CL:0004224"
CL_0004224 has_obo_namespace "cell"
CL_0004224 definition "A broadly stratifying amacrine cell that has a small dendritic field and post-synaptic terminals in S2 and S3."
- database_cross_reference "PMID:9620701"
CL_0004224 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004224 label "AB diffuse-2 amacrine cell"
CL_0004224 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004224
CL_0004224 SubClassOf CL_0004251

CL_0004225 `http://purl.obolibrary.org/obo/CL_0004225`

Added

CL_0004225 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004225 id "CL:0004225"
CL_0004225 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004225 label "spider amacrine cell"
CL_0004225 definition "A broadly stratifying amacrine cell with a small dendritic field, straight dendrites and post-synaptic terminals in S1, S2, and S3."
- database_cross_reference "PMID:9620701"
CL_0004225 has_obo_namespace "cell"
Class: CL_0004225
CL_0004225 SubClassOf CL_0004251

CL_0004226 `http://purl.obolibrary.org/obo/CL_0004226`

Added

CL_0004226 definition "An amacrine cell with a small dendritic field with post-synaptic terminals in S3 and S4."
- database_cross_reference "PMID:9620701"
CL_0004226 label "monostratified amacrine cell"
CL_0004226 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004226 id "CL:0004226"
CL_0004226 has_obo_namespace "cell"
CL_0004226 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004226
CL_0004226 SubClassOf CL_0004251
CL_0004226 SubClassOf CL_0004246

CL_0004227 `http://purl.obolibrary.org/obo/CL_0004227`

Added

CL_0004227 definition "A bistratified amacrine cell with a small dendritic field. Flat bistratified amacrine cells have post-synaptic terminals both on the border of S1 and S2, and on the border of S3 and S4."
- database_cross_reference "PMID:9620701"
CL_0004227 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004227 label "flat bistratified amacrine cell"
CL_0004227 has_obo_namespace "cell"
CL_0004227 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004227 id "CL:0004227"
Class: CL_0004227
CL_0004227 SubClassOf CL_0004250
CL_0004227 SubClassOf CL_0004251

CL_0004228 `http://purl.obolibrary.org/obo/CL_0004228`

Added

CL_0004228 label "broad diffuse amacrine cell"
CL_0004228 definition "An amacrine cell with a small dendritic field that has post-synaptic terminals in S1, S2, S3, and S4."
- database_cross_reference "PMID:9620701"
CL_0004228 id "CL:0004228"
CL_0004228 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004228 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004228 has_obo_namespace "cell"
Class: CL_0004228
CL_0004228 SubClassOf retina horizontal cell

CL_0004229 `http://purl.obolibrary.org/obo/CL_0004229`

Added

CL_0004229 id "CL:0004229"
CL_0004229 definition "A bistratified amacrine cell with a small dendritic field that has dendrite stratification in S2, and in S3 and S4."
- database_cross_reference "PMID:9620701"
CL_0004229 has_obo_namespace "cell"
CL_0004229 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004229 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004229 label "A2-like amacrine cell"
Class: CL_0004229
CL_0004229 SubClassOf CL_0004251
CL_0004229 SubClassOf CL_0004250

CL_0004230 `http://purl.obolibrary.org/obo/CL_0004230`

Added

CL_0004230 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004230 definition "A bistratified amacrine cell with a small dendritic field that has post-synaptic terminals in S1 and the border of S1-S2, and termination of a second arbor within the border of S2-S3 and S3."
- database_cross_reference "PMID:9620701"
CL_0004230 id "CL:0004230"
CL_0004230 label "diffuse bistratified amacrine cell"
CL_0004230 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004230 has_obo_namespace "cell"
Class: CL_0004230
CL_0004230 SubClassOf CL_0004251
CL_0004230 SubClassOf CL_0004250

CL_0004231 `http://purl.obolibrary.org/obo/CL_0004231`

Added

CL_0004231 label "recurving diffuse amacrine cell"
CL_0004231 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004231 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004231 has_obo_namespace "cell"
CL_0004231 id "CL:0004231"
CL_0004231 definition "A broadly stratifying amacrine cell with a small dendritic field and a complex dendritic arbor. Recurving diffuse amacrine cells have post-synaptic terminals in S2, S3, and S4."
- database_cross_reference "PMID:9620701"
Class: CL_0004231
CL_0004231 SubClassOf CL_0004251

CL_0004232 `http://purl.obolibrary.org/obo/CL_0004232`

Added

CL_0004232 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004232 definition "An amacrine cell with a flat dendritic arbor and a medium dendritic field. Starburst amacrine cells have post-synaptic terminals in S2."
- database_cross_reference "PMID:9620701"
CL_0004232 label "starburst amacrine cell"
CL_0004232 id "CL:0004232"
CL_0004232 has_obo_namespace "cell"
CL_0004232 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004232
CL_0004232 SubClassOf CL_0004252

CL_0004233 `http://purl.obolibrary.org/obo/CL_0004233`

Added

CL_0004233 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals that stratify at S2, with a second stratification that occurs in S3 and S4."
CL_0004233 id "CL:0004233"
CL_0004233 label "DAPI-3 amacrine cell"
CL_0004233 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004233 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004233 has_obo_namespace "cell"
Class: CL_0004233
CL_0004233 SubClassOf CL_0004250
CL_0004233 SubClassOf CL_0004252

CL_0004234 `http://purl.obolibrary.org/obo/CL_0004234`

Added

CL_0004234 has_obo_namespace "cell"
CL_0004234 id "CL:0004234"
CL_0004234 label "diffuse multistratified amacrine cell"
CL_0004234 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004234 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004234 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals in S2, and in S3-S4."
- database_cross_reference "PMID:9620701"
Class: CL_0004234
CL_0004234 SubClassOf CL_0004252

CL_0004235 `http://purl.obolibrary.org/obo/CL_0004235`

Added

CL_0004235 id "CL:0004235"
CL_0004235 label "AB broad diffuse-1 amacrine cell"
CL_0004235 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004235 has_obo_namespace "cell"
CL_0004235 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals in S2 and S3."
- database_cross_reference "PMID:9620701"
CL_0004235 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004235
CL_0004235 SubClassOf CL_0004252

CL_0004236 `http://purl.obolibrary.org/obo/CL_0004236`

Added

CL_0004236 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004236 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals in S2, S3, and S4."
- database_cross_reference "PMID:9620701"
CL_0004236 has_obo_namespace "cell"
CL_0004236 label "AB broad diffuse-2 amacrine cell"
CL_0004236 id "CL:0004236"
CL_0004236 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004236
CL_0004236 SubClassOf CL_0004252

CL_0004237 `http://purl.obolibrary.org/obo/CL_0004237`

Added

CL_0004237 has_obo_namespace "cell"
CL_0004237 id "CL:0004237"
CL_0004237 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004237 definition "A retinal amacrine cell with a medium dendritic field and post-synaptic terminals in S1, S2, S3, and S4."
- database_cross_reference "PMID:9620701"
CL_0004237 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004237 label "fountain amacrine cell"
Class: CL_0004237
CL_0004237 SubClassOf CL_0004252

CL_0004238 `http://purl.obolibrary.org/obo/CL_0004238`

Added

CL_0004238 has_obo_namespace "cell"
CL_0004238 definition "A bistratified amacrine cell with a medium dendritic field, a flat and sparse dendritic arbor, and post-synaptic terminals at the intersections of S1 and S2, and S3 and S4."
- database_cross_reference "PMID:9620701"
CL_0004238 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004238 id "CL:0004238"
CL_0004238 label "asymmetric bistratified amacrine cell"
CL_0004238 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004238
CL_0004238 SubClassOf CL_0004252
CL_0004238 SubClassOf CL_0004250

CL_0004239 `http://purl.obolibrary.org/obo/CL_0004239`

Added

CL_0004239 label "wavy bistratified amacrine cell"
CL_0004239 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004239 has_obo_namespace "cell"
CL_0004239 id "CL:0004239"
CL_0004239 definition "A bistratified amacrine cell with a medium dendritic field and post-synaptic terminals in S1-S2, and S4."
- database_cross_reference "PMID:9620701"
CL_0004239 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004239
CL_0004239 SubClassOf CL_0004250
CL_0004239 SubClassOf CL_0004252

CL_0004240 `http://purl.obolibrary.org/obo/CL_0004240`

Added

CL_0004240 id "CL:0004240"
CL_0004240 definition "An amacrine cell with a wide dendritic field, dendrites in S1, and post-synaptic terminals in S1."
- database_cross_reference "PMID:9620701"
CL_0004240 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004240 has_obo_namespace "cell"
CL_0004240 label "WF1 amacrine cell"
CL_0004240 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004240
CL_0004240 SubClassOf CL_0004253

CL_0004241 `http://purl.obolibrary.org/obo/CL_0004241`

Added

CL_0004241 label "WF2 amacrine cell"
CL_0004241 id "CL:0004241"
CL_0004241 definition "An amacrine cell with a wide dendritic field, dendrites in S2, and post-synaptic terminals in S1."
- database_cross_reference "PMID:9620701"
CL_0004241 has_obo_namespace "cell"
CL_0004241 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004241 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004241
CL_0004241 SubClassOf CL_0004253

CL_0004242 `http://purl.obolibrary.org/obo/CL_0004242`

Added

CL_0004242 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004242 label "WF3-1 amacrine cell"
CL_0004242 definition "An amacrine cell with a wide dendritic field, dendrites in S3, and post-synaptic terminals in S3. Dendrites of this cell type are straight and minimally branched."
- database_cross_reference "PMID:9620701"
CL_0004242 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004242 has_obo_namespace "cell"
CL_0004242 id "CL:0004242"
Class: CL_0004242
CL_0004242 SubClassOf CL_0004253

CL_0004243 `http://purl.obolibrary.org/obo/CL_0004243`

Added

CL_0004243 definition "An amacrine cell with a wild dendritic field, dendrites in S3, and post-synaptic terminals in S3. Dendrites have spikes, cross over each other, and cover a larger volume than dendrties of W3-1 retinal amacrine cells."
- database_cross_reference "PMID:9620701"
CL_0004243 label "WF3-2 amacrine cell"
CL_0004243 has_obo_namespace "cell"
CL_0004243 id "CL:0004243"
CL_0004243 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004243 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004243
CL_0004243 SubClassOf CL_0004253

CL_0004244 `http://purl.obolibrary.org/obo/CL_0004244`

Added

CL_0004244 has_obo_namespace "cell"
CL_0004244 label "WF4 amacrine cell"
CL_0004244 definition "An amacrine cell with a wide dendritic field, dendrites in S4, and post-synaptic terminals in S4."
- database_cross_reference "PMID:9620701"
CL_0004244 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004244 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004244 id "CL:0004244"
Class: CL_0004244
CL_0004244 SubClassOf CL_0004253

CL_0004245 `http://purl.obolibrary.org/obo/CL_0004245`

Added

CL_0004245 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004245 has_obo_namespace "cell"
CL_0004245 label "indoleamine-accumulating amacrine cell"
CL_0004245 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004245 id "CL:0004245"
CL_0004245 definition "An amacrine cell with a wide dendritic field and post-synaptic terminals in S5."
- database_cross_reference "PMID:9620701"
Class: CL_0004245
CL_0004245 SubClassOf CL_0004253

CL_0004246 `http://purl.obolibrary.org/obo/CL_0004246`

Added

CL_0004246 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004246 id "CL:0004246"
CL_0004246 has_obo_namespace "cell"
CL_0004246 definition "A central nervous neuron that stratifies at one and only one location."
- database_cross_reference "PMID:9620701"
CL_0004246 label "monostratified cell"
CL_0004246 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004246
CL_0004246 SubClassOf central nervous system neuron

CL_0004247 `http://purl.obolibrary.org/obo/CL_0004247`

Added

CL_0004247 label "bistratified cell"
CL_0004247 id "CL:0004247"
CL_0004247 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004247 definition "A neuron that stratifies dendrites at two and only two locations."
- database_cross_reference "PMID:9620701"
- database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0004247 has_obo_namespace "cell"
Class: CL_0004247
CL_0004247 SubClassOf neuron

CL_0004250 `http://purl.obolibrary.org/obo/CL_0004250`

Added

CL_0004250 label "bistratified retinal amacrine cell"
CL_0004250 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004250 definition "An amicrine that stratifies dendrites at two and only two locations."
- database_cross_reference "PMID:9620701"
CL_0004250 id "CL:0004250"
CL_0004250 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004250 has_obo_namespace "cell"
Class: CL_0004250
CL_0004250 SubClassOf CL_0004247
CL_0004250 SubClassOf retina horizontal cell
CL_0004250 SubClassOf amacrine cell

CL_0004251 `http://purl.obolibrary.org/obo/CL_0004251`

Added

CL_0004251 has_obo_namespace "cell"
CL_0004251 label "narrow field retinal amacrine cell"
CL_0004251 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004251 definition "An amicrine that has a narrow dendritic field."
- database_cross_reference "PMID:9620701"
CL_0004251 id "CL:0004251"
CL_0004251 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004251
CL_0004251 SubClassOf retina horizontal cell
CL_0004251 SubClassOf amacrine cell

CL_0004252 `http://purl.obolibrary.org/obo/CL_0004252`

Added

CL_0004252 id "CL:0004252"
CL_0004252 label "medium field retinal amacrine cell"
CL_0004252 definition "An amicrine that has a medium dendritic field."
- database_cross_reference "PMID:9620701"
CL_0004252 has_obo_namespace "cell"
CL_0004252 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004252 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004252
CL_0004252 SubClassOf amacrine cell
CL_0004252 SubClassOf retina horizontal cell

CL_0004253 `http://purl.obolibrary.org/obo/CL_0004253`

Added

CL_0004253 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004253 label "wide field retinal amacrine cell"
CL_0004253 id "CL:0004253"
CL_0004253 definition "An amicrine that has a wide dendritic field."
- database_cross_reference "PMID:9620701"
CL_0004253 has_obo_namespace "cell"
CL_0004253 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004253
CL_0004253 SubClassOf amacrine cell
CL_0004253 SubClassOf retina horizontal cell

Lugaro cell `http://purl.obolibrary.org/obo/CL_0011006`

Removed

Lugaro cell SubClassOf CNS interneuron

Added

Lugaro cell SubClassOf CL_0004001

RO_0002110 `http://purl.obolibrary.org/obo/RO_0002110`

Added

RO_0002110 expand expression to "BFO_0000051 some (GO_0045211 and BFO_0000050 some (GO_0045202 and BFO_0000050 some ?Y))"
RO_0002110 IAO_0000118 "synapsed in"@en
RO_0002110 has_obo_namespace "fly_anatomy.ontology"
RO_0002110 database_cross_reference "RO:0002110"
RO_0002110 expand expression to "http://purl.obolibrary.org/obo/BFO_0000051 some ( http://purl.org/obo/owl/GO#GO_0045211 and http://purl.obolibrary.org/obo/BFO_0000050 some ( http://purl.org/obo/owl/GO#GO_0045202 and http://purl.obolibrary.org/obo/BFO_0000050 some ?Y))"
RO_0002110 IAO_0000117 "Chris Mungall"@en
RO_0002110 comment "Relation between a neuron and the structure in which its dendrite receives synapses."
RO_0002110 RO_0001900 RO_0001901
RO_0002110 definition "Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input. "@en
RO_0002110 citesAsAuthority 22402613
RO_0002110 IAO_0000117 "David Osumi-Sutherland"@en
RO_0002110 id "has_postsynaptic_terminals_in"
RO_0002110 IAO_0000114 IAO_0000125
RO_0002110 label "has postsynaptic terminal in"@en
ObjectProperty: RO_0002110
RO_0002110 InverseOf RO_0002113
RO_0002110 Domain neuron
RO_0002110 SubPropertyOf: has synaptic terminal in
RO_0002110 o part_of SubPropertyOf: RO_0002110

RO_0002113 `http://purl.obolibrary.org/obo/RO_0002113`

Added

RO_0002113 IAO_0000114 IAO_0000125
RO_0002113 definition "Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input."@en
RO_0002113 RO_0001900 RO_0001901
RO_0002113 id "has_presynaptic_terminals_in"
RO_0002113 database_cross_reference "RO:0002113"
RO_0002113 has_obo_namespace "fly_anatomy.ontology"
RO_0002113 expand expression to "BFO_0000051 some (GO_0042734 that BFO_0000050 some (GO_0045202 that BFO_0000050 some ?Y))"
RO_0002113 expand expression to "<http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0042734> that <http://purl.obolibrary.org/obo/BFO_0000050> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)"@en
RO_0002113 citesAsAuthority 22402613
RO_0002113 IAO_0000118 "synapses in"@en
RO_0002113 label "has presynaptic terminal in"@en
ObjectProperty: RO_0002113
RO_0002113 Domain neuron
RO_0002113 SubPropertyOf: has synaptic terminal in
RO_0002113 o part_of SubPropertyOf: RO_0002113

RO_0002573 `http://purl.obolibrary.org/obo/RO_0002573`

Added

RO_0002573 label "has modifier"
RO_0002573 definition "A relation that holds between an attribute or a qualifier and another attribute."
RO_0002573 IAO_0000117 "Chris Mungall"
RO_0002573 in_subset ro-eco
RO_0002573 IAO_0000232 "This relation is intended to be used in combination with PATO, to be able to refine PATO quality classes using modifiers such as 'abnormal' and 'normal'. It has yet to be formally aligned into an ontological framework; it's not clear what the ontological status of the "modifiers" are."
RO_0002573 IAO_0000119 20064205
ObjectProperty: RO_0002573

RO_0015007 `http://purl.obolibrary.org/obo/RO_0015007`

Added

RO_0015007 comment "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'."
RO_0015007 label "increased in magnitude relative to"
RO_0015007 definition "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"
ObjectProperty: RO_0015007

RO_0015008 `http://purl.obolibrary.org/obo/RO_0015008`

Added

RO_0015008 definition "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"
RO_0015008 comment "This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'."
RO_0015008 label "decreased in magnitude relative to"
ObjectProperty: RO_0015008

axon synapses in `http://purl.obolibrary.org/obo/RO_0002102`

Removed

axon synapses in SubPropertyOf: has synaptic terminal in

Added

axon synapses in SubPropertyOf: RO_0002113

cerebellar Golgi cell `http://purl.obolibrary.org/obo/CL_0000119`

Removed

cerebellar Golgi cell SubClassOf CNS interneuron

Added

cerebellar Golgi cell SubClassOf CL_0004001

cortical interneuron `http://purl.obolibrary.org/obo/CL_0008031`

Removed

cortical interneuron SubClassOf CNS interneuron

Added

cortical interneuron SubClassOf CL_0004001

dorsal horn interneuron `http://purl.obolibrary.org/obo/CL_0011000`

Added

dorsal horn interneuron SubClassOf CL_0004001

lacks_post_synaptic_terminals_in `http://purl.obolibrary.org/obo/cl#lacks_post_synaptic_terminals_in`

Added

lacks_post_synaptic_terminals_in label "lacks_post_synaptic_terminals_in"
ObjectProperty: lacks_post_synaptic_terminals_in

obsolete CP:0000000 `http://purl.obolibrary.org/obo/CP_0000000`

Removed

obsolete CP:0000000 deprecated true
obsolete CP:0000000 label "obsolete CP:0000000"
obsolete CP:0000000 comment "ID was moved to the CL namespace. Use CL:0017500."
obsolete CP:0000000 term replaced by neutrophillic cytoplasm
Class: obsolete CP:0000000

obsolete CP:0000025 `http://purl.obolibrary.org/obo/CP_0000025`

Removed

obsolete CP:0000025 comment "ID was moved to the CL namespace. Use CL:0017501."
obsolete CP:0000025 deprecated true
obsolete CP:0000025 term replaced by obsolete lobed nucleus
obsolete CP:0000025 label "obsolete CP:0000025"
Class: obsolete CP:0000025

obsolete CP:0000027 `http://purl.obolibrary.org/obo/CP_0000027`

Removed

obsolete CP:0000027 label "obsolete CP:0000027"
obsolete CP:0000027 comment "ID was moved to the CL namespace. Use CL:0017502."
obsolete CP:0000027 deprecated true
obsolete CP:0000027 term replaced by acidophilic cytoplasm
Class: obsolete CP:0000027

obsolete CP:0000028 `http://purl.obolibrary.org/obo/CP_0000028`

Removed

obsolete CP:0000028 comment "ID was moved to the CL namespace. Use CL:0017503."
obsolete CP:0000028 label "obsolete CP:0000028"
obsolete CP:0000028 term replaced by basophilic cytoplasm
obsolete CP:0000028 deprecated true
Class: obsolete CP:0000028

obsolete CP:0000035 `http://purl.obolibrary.org/obo/CP_0000035`

Removed

obsolete CP:0000035 term replaced by polychromatophilic cytoplasm
obsolete CP:0000035 comment "ID was moved to the CL namespace. Use CL:0017504."
obsolete CP:0000035 label "obsolete CP:0000035"
obsolete CP:0000035 deprecated true
Class: obsolete CP:0000035

obsolete CP:0000037 `http://purl.obolibrary.org/obo/CP_0000037`

Removed

obsolete CP:0000037 comment "ID was moved to the CL namespace. Use CL:0017505."
obsolete CP:0000037 term replaced by increased nucleus size
obsolete CP:0000037 label "obsolete CP:0000037"
obsolete CP:0000037 deprecated true
Class: obsolete CP:0000037

obsolete CP:0000039 `http://purl.obolibrary.org/obo/CP_0000039`

Removed

obsolete CP:0000039 comment "ID was moved to the CL namespace. Use CL:0017506."
obsolete CP:0000039 label "obsolete CP:0000039"
obsolete CP:0000039 deprecated true
obsolete CP:0000039 term replaced by banded nucleus
Class: obsolete CP:0000039

obsolete CP:0000040 `http://purl.obolibrary.org/obo/CP_0000040`

Removed

obsolete CP:0000040 deprecated true
obsolete CP:0000040 label "obsolete CP:0000040"
obsolete CP:0000040 comment "ID was moved to the CL namespace. Use CL:0017507."
obsolete CP:0000040 term replaced by reniform nucleus
Class: obsolete CP:0000040

obsolete CP:0000043 `http://purl.obolibrary.org/obo/CP_0000043`

Removed

obsolete CP:0000043 label "obsolete CP:0000043"
obsolete CP:0000043 term replaced by cartwheel heterochromatin
obsolete CP:0000043 comment "ID was moved to the CL namespace. Use CL:0017508."
obsolete CP:0000043 deprecated true
Class: obsolete CP:0000043

participates in `http://purl.obolibrary.org/obo/RO_0000056`

Added

participates in label "participates_in"

retina horizontal cell `http://purl.obolibrary.org/obo/CL_0000745`

Removed

retina horizontal cell definition "A neuron that laterally connects other neurons in the inner nuclear layer of the retina."
- database_cross_reference "ISBN:0195088433"
retina horizontal cell SubClassOf interneuron

Added

retina horizontal cell has_obo_namespace "cell"
retina horizontal cell creation_date "2010-08-11T01:45:26Z"
retina horizontal cell database_cross_reference "BAMS:1113"
retina horizontal cell definition "A neuron that laterally connects other neurons in the inner nuclear layer of the retina. Retina horizontal cells have dendrites which run tangential to or parallel with the surface of the colliculus. Most horizontal cells have fusiform cell bodies, about 10 micrometers in diameter, lying within 250 micrometers of the surface."
- database_cross_reference "ISBN:0195088433"
retina horizontal cell id "CL:0004045"
retina horizontal cell database_cross_reference "BAMS:973"
retina horizontal cell SubClassOf CL_0004001

retinal bipolar neuron `http://purl.obolibrary.org/obo/CL_0000748`

Removed

retinal bipolar neuron label "retinal bipolar neuron"
retinal bipolar neuron definition "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer."
- database_cross_reference "PMID:14689473"

Added

retinal bipolar neuron has_obo_namespace "cell"
retinal bipolar neuron id "CL:0004077"
retinal bipolar neuron definition "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. Retinal bipolar neurons have dendritic processes that terminate in or about the outer plexiform layers, where they make contact with photoreceptors, and with axonal processes that terminate in or about the inner plexiform layer."
- database_cross_reference "PMID:14689473"
retinal bipolar neuron database_cross_reference "BAMS:972"
retinal bipolar neuron label "retinal bipolar cell"
retinal bipolar neuron SubClassOf synapsed to some photoreceptor cell
retinal bipolar neuron SubClassOf CL_0004001

Nov 04 '22 17:11 github-actions[bot]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
Version IRI: None
Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
Version IRI: None
Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CL_0003000 `http://purl.obolibrary.org/obo/CL_0003000`

Added

Class: CL_0003000

CL_0003001 `http://purl.obolibrary.org/obo/CL_0003001`

Added

CL_0003001 has_exact_synonym "retinal ganglion D cell"^^string
CL_0003001 id "CL:0003001"^^string
CL_0003001 has_obo_namespace "cell"^^string
CL_0003001 label "bistratified retinal ganglion cell"^^string
CL_0003001 definition "A retinal ganglion cell that has dendrites stratified in two layers of the inner-plexiform layer."^^string
Class: CL_0003001
CL_0003001 EquivalentTo retinal ganglion cell and (bearer of some bistratified dendrite cell morphology)

CL_0003002 `http://purl.obolibrary.org/obo/CL_0003002`

Added

CL_0003002 label "G1 retinal ganglion cell"^^string
CL_0003002 id "CL:0003002"^^string
CL_0003002 has_obo_namespace "cell"^^string
CL_0003002 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003002 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003002 definition "A retinal ganglion cell that has a small dendritic field and a medium dendritic arbor with post sympatic terminals in sublaminar layer S3."^^string
- database_cross_reference "PMID:11978858"^^string
Class: CL_0003002
CL_0003002 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (dendritic field size and (decreased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003003 `http://purl.obolibrary.org/obo/CL_0003003`

Added

CL_0003003 definition "A mono-stratified retinal ganglion cell that has a small dendritic field and a sparse dendritic arbor with post sympatic terminals in sublaminar layer S3."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003003 label "G2 retinal ganglion cell"^^string
CL_0003003 has_obo_namespace "cell"^^string
CL_0003003 id "CL:0003003"^^string
CL_0003003 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003003 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003003
CL_0003003 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some sparse))))) and (bearer of some (dendritic field size and (decreased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003004 `http://purl.obolibrary.org/obo/CL_0003004`

Added

CL_0003004 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003004 has_obo_namespace "cell"^^string
CL_0003004 label "G3 retinal ganglion cell"^^string
CL_0003004 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003004 definition "A bistratified retinal ganglion cell that has a small dendritic field with sparse density that terminates at the intersection of the S4-S5 sublaminar level, and a second dendrite field that is medium in size and degree of arborization that terminates in sublaminar layer S2."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003004 comment "is_a bistratified retinal ganglion cell S4-S5 dendrite field having (small dendritic field, sparse density) and second dendrite field having (medium, meduim)"^^string
CL_0003004 id "CL:0003004"^^string
Class: CL_0003004
CL_0003004 EquivalentTo retinal ganglion cell and (bearer of some bistratified dendrite cell morphology) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (has postsynaptic terminal in some border of sublaminar layers S4 and S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3)

CL_0003005 `http://purl.obolibrary.org/obo/CL_0003005`

Added

CL_0003005 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003005 definition "A mono-stratified retinal ganglion cell that has a small dendritic field and dense dendritic arbor."^^string
CL_0003005 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003005 id "CL:0003005"^^string
CL_0003005 has_obo_namespace "cell"^^string
CL_0003005 comment "Masland nomenclature PMID:11978858"^^string
CL_0003005 label "G4 retinal ganglion cell"^^string
Class: CL_0003005
CL_0003005 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (dendritic field size and (decreased in magnitude relative to some normal)))

CL_0003006 `http://purl.obolibrary.org/obo/CL_0003006`

Added

CL_0003006 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003006 has_obo_namespace "cell"^^string
CL_0003006 label "G4-ON retinal ganglion cell"^^string
CL_0003006 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003006 definition "A G4 retinal ganglion cell that has post sympatic terminals in sublaminar layers S3 and S4."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003006 id "CL:0003006"^^string
Class: CL_0003006
CL_0003006 EquivalentTo CL_0003005 and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003007 `http://purl.obolibrary.org/obo/CL_0003007`

Added

CL_0003007 definition "A G4 retinal ganglion cell that has post sympatic terminals in sublaminar layers S2 and S3."^^string
CL_0003007 label "G4-OFF retinal ganglion cell"^^string
CL_0003007 has_obo_namespace "cell"^^string
CL_0003007 comment "Masland nomenclature PMID:11978858"^^string
CL_0003007 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003007 id "CL:0003007"^^string
CL_0003007 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003007
CL_0003007 EquivalentTo CL_0003005 and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003008 `http://purl.obolibrary.org/obo/CL_0003008`

Added

CL_0003008 id "CL:0003008"^^string
CL_0003008 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003008 definition "A mono-stratified retinal ganglion cell that has a medium dendritic field and a medium dendritic arbor with post sympatic terminals in sublaminar layer S2."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003008 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003008 label "G5 retinal ganglion cell"^^string
CL_0003008 has_obo_namespace "cell"^^string
Class: CL_0003008
CL_0003008 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (normal and dendritic field size)) and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003009 `http://purl.obolibrary.org/obo/CL_0003009`

Added

CL_0003009 id "CL:0003009"^^string
CL_0003009 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003009 has_obo_namespace "cell"^^string
CL_0003009 label "G6 retinal ganglion cell"^^string
CL_0003009 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003009 definition "A mono-stratified retinal ganglion cell that has a medium dendritic field and a sparse dendritic arbor with post sympatic terminals in sublaminar layer S4 and S5."^^string
- database_cross_reference "PMID:11978858"^^string
Class: CL_0003009
CL_0003009 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some sparse))))) and (bearer of some (normal and dendritic field size)) and (has postsynaptic terminal in some sublaminar layer S4) and (has postsynaptic terminal in some sublaminar layer S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3)

CL_0003010 `http://purl.obolibrary.org/obo/CL_0003010`

Added

CL_0003010 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003010 id "CL:0003010"^^string
CL_0003010 definition "A bistratified retinal ganglion cell that has a dendrite filed that terminates in sublaminar layer S2 and a second dendrite field that terminates in sublaminar layer S4."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003010 has_exact_synonym "ON-OFF DS"^^string
CL_0003010 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003010 label "G7 retinal ganglion cell"^^string
CL_0003010 has_obo_namespace "cell"^^string
Class: CL_0003010
CL_0003010 EquivalentTo retinal ganglion cell and (bearer of some bistratified dendrite cell morphology) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003011 `http://purl.obolibrary.org/obo/CL_0003011`

Added

CL_0003011 label "G8 retinal ganglion cell"^^string
CL_0003011 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003011 definition "A mono-stratified retinal ganglion cell that has a large dendritic field and a sparse dendritic arbor with post sympatic terminals in sublaminar layer S4."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003011 id "CL:0003011"^^string
CL_0003011 has_obo_namespace "cell"^^string
CL_0003011 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003011
CL_0003011 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some sparse))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003012 `http://purl.obolibrary.org/obo/CL_0003012`

Added

CL_0003012 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003012 label "G9 retinal ganglion cell"^^string
CL_0003012 definition "A mono-stratified retinal ganglion cell that has a large dendritic field and a medium dendritic arbor with post sympatic terminals in sublaminar layer S1 and S2."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003012 has_obo_namespace "cell"^^string
CL_0003012 id "CL:0003012"^^string
CL_0003012 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003012
CL_0003012 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003013 `http://purl.obolibrary.org/obo/CL_0003013`

Added

CL_0003013 has_obo_namespace "cell"^^string
CL_0003013 comment "Capable of ON directional sensitivity."^^string
CL_0003013 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
CL_0003013 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003013 label "G10 retinal ganglion cell"^^string
CL_0003013 definition "A mono-stratified retinal ganglion cell that has a large dendritic field, a medium dendritic arbor, and a long secondary dendrite shaft with post sympatic terminals in sublaminar layer S4."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003013 id "CL:0003013"^^string
Class: CL_0003013
CL_0003013 EquivalentTo retinal ganglion cell and (has part some (dendritic branch and ((has part some dendritic shaft) and (bearer of some increased length)))) and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003014 `http://purl.obolibrary.org/obo/CL_0003014`

Added

CL_0003014 definition "A mono-stratified retinal ganglion cell that has a large dendritic field, a medium dendritic arbor, and a medium length secondary dendrite shaft."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003014 id "CL:0003014"^^string
CL_0003014 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
CL_0003014 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003014 label "G11 retinal ganglion cell"^^string
CL_0003014 has_obo_namespace "cell"^^string
CL_0003014 comment "Is capable of brisk transient currents."^^string
Class: CL_0003014
CL_0003014 EquivalentTo retinal ganglion cell and (has part some (dendritic branch and ((has part some dendritic shaft) and (bearer of some normal length)))) and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0003015 `http://purl.obolibrary.org/obo/CL_0003015`

Added

CL_0003015 has_obo_namespace "cell"^^string
CL_0003015 definition "A G11 retinal ganglion cell that has post synaptic terminals in sublaminar layer S4."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003015 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003015 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
CL_0003015 label "G11-ON retinal ganglion cell"^^string
CL_0003015 id "CL:0003015"^^string
Class: CL_0003015
CL_0003015 EquivalentTo CL_0003014 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003015 SubClassOf CL_0003014

CL_0003016 `http://purl.obolibrary.org/obo/CL_0003016`

Added

CL_0003016 database_cross_reference "https://orcid.org/0000-0002-5260-9315"
CL_0003016 label "G11-OFF retinal ganglion cell"^^string
CL_0003016 definition "A G11 retinal ganglion cell that has post synaptic terminals in sublaminar layer S2."^^string
- database_cross_reference "PMID:11978858"^^string
CL_0003016 id "CL:0003016"^^string
CL_0003016 has_obo_namespace "cell"^^string
CL_0003016 database_cross_reference "https://orcid.org/0000-0001-7258-9596"
Class: CL_0003016
CL_0003016 EquivalentTo CL_0003014 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003016 SubClassOf CL_0003014

CL_0003017 `http://purl.obolibrary.org/obo/CL_0003017`

Added

CL_0003017 definition " A retinal ganglion B cell that has post synaptic terminals in S2."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003017 label "retinal ganglion cell B3 outer"^^string
CL_0003017 has_obo_namespace "cell"^^string
CL_0003017 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003017 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003017 id "CL:0003017"^^string
Class: CL_0003017
CL_0003017 EquivalentTo CL_0004183 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003017 SubClassOf CL_0004183

CL_0003018 `http://purl.obolibrary.org/obo/CL_0003018`

Added

CL_0003018 definition "A retinal ganglion B3 cell with dentrites terminating in S4."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003018 label "retinal ganglion cell B3 inner"^^string
CL_0003018 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003018 has_obo_namespace "cell"^^string
CL_0003018 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003018 database_cross_reference "BAMS:1010"^^string
CL_0003018 id "CL:0003018"^^string
Class: CL_0003018
CL_0003018 EquivalentTo CL_0004183 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003018 SubClassOf CL_0004183

CL_0003020 `http://purl.obolibrary.org/obo/CL_0003020`

Added

CL_0003020 has_obo_namespace "cell"^^string
CL_0003020 definition "A retinal ganglion cell C that has post-synaptic terminals in S2."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003020 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003020 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003020 label "retinal ganglion cell C outer"^^string
CL_0003020 id "CL:0003020"^^string
Class: CL_0003020
CL_0003020 EquivalentTo CL_0004116 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003021 `http://purl.obolibrary.org/obo/CL_0003021`

Added

CL_0003021 label "retinal ganglion cell C4"^^string
CL_0003021 has_obo_namespace "cell"^^string
CL_0003021 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003021 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003021 id "CL:0003021"^^string
CL_0003021 definition "A retinal ganglion cell C outer that has a medium dendritic field and a dense dendritic arbor."^^string
- database_cross_reference "PMID:12209831"^^string
Class: CL_0003021
CL_0003021 EquivalentTo CL_0003020 and (has part some (dendritic tree and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (normal and dendritic field size))

CL_0003022 `http://purl.obolibrary.org/obo/CL_0003022`

Added

CL_0003022 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003022 definition "A retinal ganglion cell C inner that has dense dendritic diversity."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003022 id "CL:0003022"^^string
CL_0003022 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003022 label "retinal ganglion cell C5"^^string
CL_0003022 has_obo_namespace "cell"^^string
Class: CL_0003022
CL_0003022 EquivalentTo CL_0003020 and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (normal and dendritic field size))

CL_0003023 `http://purl.obolibrary.org/obo/CL_0003023`

Added

CL_0003023 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003023 label "retinal ganglion cell C6"^^string
CL_0003023 has_obo_namespace "cell"^^string
CL_0003023 definition "A retinal ganglion cell C outer that has dense dendritic diversity."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003023 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003023 id "CL:0003023"^^string
Class: CL_0003023
CL_0003023 EquivalentTo CL_0003020 and (has part some (dendritic tree and (bearer of some asymmetrical) and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0003024 `http://purl.obolibrary.org/obo/CL_0003024`

Added

CL_0003024 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003024 id "CL:0003024"^^string
CL_0003024 label "retinal ganglion cell C inner"^^string
CL_0003024 has_obo_namespace "cell"^^string
CL_0003024 definition "A retinal ganglion cell medium cell bodies and large dendritic fields."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003024 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0003024
CL_0003024 EquivalentTo CL_0004116 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003025 `http://purl.obolibrary.org/obo/CL_0003025`

Added

CL_0003025 id "CL:0003025"^^string
CL_0003025 definition "A retinal ganglion cell C inner that has dense dendritic diversity."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003025 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003025 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003025 has_related_synonym "epsilon"^^string
CL_0003025 has_obo_namespace "cell"^^string
CL_0003025 label "retinal ganglion cell C3"^^string
Class: CL_0003025
CL_0003025 EquivalentTo CL_0003024 and (has part some (dendritic tree and (bearer of some (area density and (has modifier some sparse))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0003026 `http://purl.obolibrary.org/obo/CL_0003026`

Added

CL_0003026 label "retinal ganglion cell D1"^^string
CL_0003026 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003026 has_obo_namespace "cell"^^string
CL_0003026 id "CL:0003026"^^string
CL_0003026 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003026 definition "A bistratified retinal ganglion cell that has a small dendrite fields with a sparse dendrite arbor terminating in S2 and S3."^^string
- database_cross_reference "PMID:12209831"^^string
Class: CL_0003026
CL_0003026 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some sparse))))) and (bearer of some bistratified dendrite cell morphology) and (bearer of some (dendritic field size and (decreased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003027 `http://purl.obolibrary.org/obo/CL_0003027`

Added

CL_0003027 id "CL:0003027"^^string
CL_0003027 has_related_synonym "ON-OFF direction selective"^^string
CL_0003027 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0003027 has_related_synonym "iota cell"^^string
CL_0003027 has_obo_namespace "cell"^^string
CL_0003027 definition "A bistratified retinal ganglion cell D cell that has medium dendritic arbor and a large dendritic field that terminates in S2 and S4."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0003027 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0003027 label "retinal ganglion cell D2"^^string
Class: CL_0003027
CL_0003027 EquivalentTo retinal ganglion cell and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some bistratified dendrite cell morphology) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)

CL_0003028 `http://purl.obolibrary.org/obo/CL_0003028`

Added

CL_0003028 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003028 definition "A monostratified retinal ganglion cell that has a small dendrite field with a dense dendrite arbor with post synaptic terminals in sublaminer layer S4."^^string
CL_0003028 has_obo_namespace "cell"^^string
CL_0003028 id "CL:0003028"^^string
CL_0003028 label "M1 retinal ganglion cell"^^string
Class: CL_0003028
CL_0003028 EquivalentTo CL_0003000 and (has quality some CP_0001066) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003028 SubClassOf CL_0003000

CL_0003029 `http://purl.obolibrary.org/obo/CL_0003029`

Added

CL_0003029 definition "A monostratified retinal ganglion cell that has a small soma, a small dendrite field with a dense dendrite arbor, and post synaptic terminals in sublaminer layer S2 and S3."^^string
CL_0003029 label "M2 retinal ganglion cell"^^string
CL_0003029 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003029 has_obo_namespace "cell"^^string
CL_0003029 id "CL:0003029"^^string
Class: CL_0003029
CL_0003029 EquivalentTo CL_0003000 and (has quality some CP_0000102) and (has quality some CP_0001066) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003029 SubClassOf CL_0003000

CL_0003030 `http://purl.obolibrary.org/obo/CL_0003030`

Added

CL_0003030 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003030 has_obo_namespace "cell"^^string
CL_0003030 definition "A monostratified retinal ganglion cell that has a medium soma and a small dendrite field."^^string
CL_0003030 label "M3 retinal ganglion cell"^^string
CL_0003030 id "CL:0003030"^^string
Class: CL_0003030
CL_0003030 EquivalentTo CL_0003000 and (has quality some CP_0000101) and (has quality some CP_0000107)
CL_0003030 SubClassOf CL_0003000

CL_0003031 `http://purl.obolibrary.org/obo/CL_0003031`

Added

CL_0003031 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003031 id "CL:0003031"^^string
CL_0003031 definition "A monostratified retinal ganglion cell that has post synaptic terminals in sublaminar layer S4."^^string
CL_0003031 label "M3-ON retinal ganglion cell"^^string
CL_0003031 has_obo_namespace "cell"^^string
Class: CL_0003031
CL_0003031 EquivalentTo CL_0003030 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003031 SubClassOf CL_0003030

CL_0003032 `http://purl.obolibrary.org/obo/CL_0003032`

Added

CL_0003032 id "CL:0003032"^^string
CL_0003032 definition "A monostratified retinal ganglion cell that has post synaptic terminals in sublaminar layer S2."^^string
CL_0003032 label "M3-OFF retinal ganglion cell"^^string
CL_0003032 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003032 has_obo_namespace "cell"^^string
Class: CL_0003032
CL_0003032 EquivalentTo CL_0003030 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003032 SubClassOf CL_0003030

CL_0003033 `http://purl.obolibrary.org/obo/CL_0003033`

Added

CL_0003033 id "CL:0003033"^^string
CL_0003033 has_obo_namespace "cell"^^string
CL_0003033 label "M4 retinal ganglion cell"^^string
CL_0003033 definition "A monostratified retinal ganglion cell that has a large soma, a medium dendritic field with post synaptic terminals in sublaminar layer S3."^^string
CL_0003033 comment "Chalupa nomenclature PMID:16626866"^^string
Class: CL_0003033
CL_0003033 EquivalentTo CL_0003000 and (has quality some CP_0000100) and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003033 SubClassOf CL_0003000

CL_0003034 `http://purl.obolibrary.org/obo/CL_0003034`

Added

CL_0003034 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003034 label "M5 retinal ganglion cell"^^string
CL_0003034 id "CL:0003034"^^string
CL_0003034 definition "A monostratified retinal ganglion cell that has a small soma, an assymetric dendritic field with post synaptic terminals in sublaminar layer S3."^^string
CL_0003034 has_obo_namespace "cell"^^string
Class: CL_0003034
CL_0003034 EquivalentTo CL_0003000 and (has quality some CP_0000102) and (has quality some CP_0000121) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003034 SubClassOf CL_0003000

CL_0003035 `http://purl.obolibrary.org/obo/CL_0003035`

Added

CL_0003035 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003035 definition "A monostratified retinal ganglion cell that contains opsin."^^string
CL_0003035 has_obo_namespace "cell"^^string
CL_0003035 label "M6 retinal ganglion cell"^^string
CL_0003035 id "CL:0003035"^^string
Class: CL_0003035
CL_0003035 EquivalentTo CL_0003000 and (has part some PR_000001243)
CL_0003035 SubClassOf CL_0003000

CL_0003036 `http://purl.obolibrary.org/obo/CL_0003036`

Added

CL_0003036 id "CL:0003036"^^string
CL_0003036 has_obo_namespace "cell"^^string
CL_0003036 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with medium dendritic arbor."^^string
CL_0003036 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003036 label "M7 retinal ganglion cell"^^string
Class: CL_0003036
CL_0003036 EquivalentTo CL_0003000 and (has quality some CP_0000100) and (has quality some CP_0001070)
CL_0003036 SubClassOf CL_0003000

CL_0003037 `http://purl.obolibrary.org/obo/CL_0003037`

Added

CL_0003037 has_obo_namespace "cell"^^string
CL_0003037 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003037 id "CL:0003037"^^string
CL_0003037 label "M7-ON retinal ganglion cell"^^string
CL_0003037 definition "An M7 retinal ganglion cells with synaptic terminals in S4."^^string
Class: CL_0003037
CL_0003037 EquivalentTo CL_0003036 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003037 SubClassOf CL_0003036

CL_0003038 `http://purl.obolibrary.org/obo/CL_0003038`

Added

CL_0003038 definition "An M7 retinal ganglion cells with synaptic terminals in S2."^^string
CL_0003038 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003038 label "M7-OFF retinal ganglion cell"^^string
CL_0003038 id "CL:0003038"^^string
CL_0003038 has_obo_namespace "cell"^^string
Class: CL_0003038
CL_0003038 EquivalentTo CL_0003036 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003038 SubClassOf CL_0003036

CL_0003039 `http://purl.obolibrary.org/obo/CL_0003039`

Added

CL_0003039 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with dense dendritic arbor"^^string
CL_0003039 id "CL:0003039"^^string
CL_0003039 label "M8 retinal ganglion cell"^^string
CL_0003039 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003039 has_obo_namespace "cell"^^string
Class: CL_0003039
CL_0003039 EquivalentTo CL_0003000 and (has quality some CP_0000100) and (has quality some CP_0001074)
CL_0003039 SubClassOf CL_0003000

CL_0003040 `http://purl.obolibrary.org/obo/CL_0003040`

Added

CL_0003040 id "CL:0003040"^^string
CL_0003040 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with medium dendritic arbor"^^string
CL_0003040 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003040 label "M9 retinal ganglion cell"^^string
CL_0003040 has_obo_namespace "cell"^^string
Class: CL_0003040
CL_0003040 EquivalentTo CL_0003000 and (has quality some CP_0000101) and (has quality some CP_0001070)
CL_0003040 SubClassOf CL_0003000

CL_0003041 `http://purl.obolibrary.org/obo/CL_0003041`

Added

CL_0003041 definition "An M9 retinal ganglion cells with synaptic terminals in S2."^^string
CL_0003041 has_obo_namespace "cell"^^string
CL_0003041 label "M9-ON retinal ganglion cell"^^string
CL_0003041 id "CL:0003041"^^string
CL_0003041 comment "Chalupa nomenclature PMID:16626866"^^string
Class: CL_0003041
CL_0003041 EquivalentTo CL_0003040 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003041 SubClassOf CL_0003040

CL_0003042 `http://purl.obolibrary.org/obo/CL_0003042`

Added

CL_0003042 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003042 id "CL:0003042"^^string
CL_0003042 label "M9-OFF retinal ganglion cell"^^string
CL_0003042 definition "An M9 retinal ganglion cells with synaptic terminals in S4."^^string
CL_0003042 has_obo_namespace "cell"^^string
Class: CL_0003042
CL_0003042 EquivalentTo CL_0003040 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003042 SubClassOf CL_0003040

CL_0003043 `http://purl.obolibrary.org/obo/CL_0003043`

Added

CL_0003043 comment "Chalupa nomenclature PMID:16626866"^^string
CL_0003043 id "CL:0003043"^^string
CL_0003043 has_obo_namespace "cell"^^string
CL_0003043 label "M10 retinal ganglion cell"^^string
CL_0003043 definition "A monostratified retinal ganglion cell with large soma and large dendritic field, with dense dendritic arbor"^^string
Class: CL_0003043
CL_0003043 EquivalentTo CL_0003000 and (has quality some CP_0000100) and (has quality some CP_0001076)
CL_0003043 SubClassOf CL_0003000

CL_0003044 `http://purl.obolibrary.org/obo/CL_0003044`

Added

CL_0003044 has_obo_namespace "cell"^^string
CL_0003044 label "M11 retinal ganglion cell"^^string
CL_0003044 comment "Chalupa nomenclature PMID:16626866."^^string
CL_0003044 definition "A bistratified ganglion cell with small, dense dendritic fields that terminate in S1 and S3."^^string
CL_0003044 id "CL:0003044"^^string
Class: CL_0003044
CL_0003044 EquivalentTo CL_0003001 and (has quality some CP_0001066) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003044 SubClassOf CL_0003001

CL_0003045 `http://purl.obolibrary.org/obo/CL_0003045`

Added

CL_0003045 has_obo_namespace "cell"^^string
CL_0003045 definition "A bistratified ganglion cell with larger, assymetric dendritic fields that terminate in S2 and S4."^^string
CL_0003045 id "CL:0003045"^^string
CL_0003045 comment "Chalupa nomenclature PMID:16626866."^^string
CL_0003045 label "M12 retinal ganglion cell"^^string
Class: CL_0003045
CL_0003045 EquivalentTo CL_0003001 and (has quality some CP_0001078) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003045 SubClassOf CL_0003001

CL_0003046 `http://purl.obolibrary.org/obo/CL_0003046`

Added

CL_0003046 id "CL:0003046"^^string
CL_0003046 comment "Chalupa nomenclature PMID:16626866."^^string
CL_0003046 definition "A bistratifed retinal ganglion cell that has smaller, symmetric dendritic fields that terminate in S2 and S4."^^string
CL_0003046 has_obo_namespace "cell"^^string
CL_0003046 label "M13 retinal ganglion cell"^^string
Class: CL_0003046
CL_0003046 EquivalentTo CL_0003001 and (has quality some CP_0001064) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0003046 SubClassOf CL_0003001

CL_0003047 `http://purl.obolibrary.org/obo/CL_0003047`

Added

CL_0003047 definition "A bistratifed retinal ganglion cell that has smaller, symmetric dendritic fields that terminate in S1 and S4-S5."^^string
CL_0003047 label "M14 retinal ganglion cell"^^string
CL_0003047 comment "Chalupa nomenclature PMID:16626866."^^string
CL_0003047 id "CL:0003047"^^string
CL_0003047 has_obo_namespace "cell"^^string
Class: CL_0003047
CL_0003047 EquivalentTo CL_0003001 and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layers S4 or S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3)
CL_0003047 SubClassOf CL_0003001

CL_0003048 `http://purl.obolibrary.org/obo/CL_0003048`

Added

CL_0003048 has_obo_namespace "cell"^^string
CL_0003048 definition "A cone cell that detects longer wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 564-580 nm."^^string
CL_0003048 label "L cone cell"^^string
CL_0003048 id "CL:0003048"^^string
Class: CL_0003048
CL_0003048 EquivalentTo retinal cone cell and (has part some PR_000001244)
CL_0003048 SubClassOf retinal cone cell

CL_0003049 `http://purl.obolibrary.org/obo/CL_0003049`

Added

CL_0003049 id "CL:0003049"^^string
CL_0003049 has_obo_namespace "cell"^^string
CL_0003049 definition "A cone cell that detects medium wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 534-545 nm."^^string
CL_0003049 label "M cone cell"^^string
Class: CL_0003049
CL_0003049 EquivalentTo retinal cone cell and (has part some PR_000001224)
CL_0003049 SubClassOf retinal cone cell

CL_0003050 `http://purl.obolibrary.org/obo/CL_0003050`

Added

CL_0003050 has_obo_namespace "cell"^^string
CL_0003050 definition "A cone cell that detects short wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 420-440 nm."^^string
CL_0003050 id "CL:0003050"^^string
CL_0003050 label "S cone cell"^^string
Class: CL_0003050
CL_0003050 SubClassOf retinal cone cell

CL_0003051 `http://purl.obolibrary.org/obo/CL_0003051`

Added

CL_0003051 id "CL:0003051"^^string
CL_0003051 has_obo_namespace "cell"^^string
CL_0003051 label "UV cone cell"^^string
CL_0003051 definition "A cone cell that detects ultraviolet (UV) wavelength light."^^string
Class: CL_0003051
CL_0003051 SubClassOf retinal cone cell

CL_0004001 `http://purl.obolibrary.org/obo/CL_0004001`

Added

CL_0004001 has_obo_namespace "cell"^^string
CL_0004001 definition "An interneuron whose axon stays entirely within the gray matter region where the cell body resides."^^string
CL_0004001 id "CL:0004001"^^string
CL_0004001 comment "Local interneurons form the category of interneurons whose axon stays entirely within the gray matter region where the cell body resides (Swanson, 2003, p. 245; Bota and Swanson, 2007, Fig. 3)."^^string
CL_0004001 label "local interneuron"^^string
CL_0004001 database_cross_reference "BAMS:1002"^^string
Class: CL_0004001
CL_0004001 EquivalentTo CNS interneuron and (has soma location some gray matter)
CL_0004001 SubClassOf CNS interneuron

CL_0004115 `http://purl.obolibrary.org/obo/CL_0004115`

Added

CL_0004115 has_obo_namespace "cell"^^string
CL_0004115 definition "A monostratified retinal ganglion cell with small to medium soma and small to medium dendritic field."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004115 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004115 label "retinal ganglion cell B"^^string
CL_0004115 id "CL:0004115"^^string
CL_0004115 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004115
CL_0004115 SubClassOf retinal ganglion cell

CL_0004116 `http://purl.obolibrary.org/obo/CL_0004116`

Added

CL_0004116 label "retinal ganglion cell C"^^string
CL_0004116 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004116 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004116 comment "Group RGC cells are defined as having small to medium cell bodies and medium to large dendritic fields. Their morphology was more heterogeneous than that of Groups RGA and RGB. We classified cells with a large soma and a large dendritic field as RGA, cells with a small to medium to sized soma and a small to medium to sized dendritic field as RGB, and cells with a small to medium to sized soma but a medium to large dendritic field RGC."^^string
CL_0004116 id "CL:0004116"^^string
CL_0004116 definition "A retinal ganglion with cell medium cell bodies and medium to large dendritic fields."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004116 has_obo_namespace "cell"^^string
Class: CL_0004116
CL_0004116 SubClassOf retinal ganglion cell

CL_0004117 `http://purl.obolibrary.org/obo/CL_0004117`

Added

CL_0004117 has_exact_synonym "alpha cell"^^string
CL_0004117 comment "This group includes all of the large to bodied/large to field RGCs in the rat .Group RGA cells.have large somata (15 to 39 micrometers in diameter) and large, radially branching dendritic fields (235 to 748 micrometers in diameter), and many exhibit tracer coupling."^^string
CL_0004117 database_cross_reference "BAMS:1009"^^string
CL_0004117 has_obo_namespace "cell"^^string
CL_0004117 label "retinal ganglion cell A"^^string
CL_0004117 id "CL:0004117"^^string
CL_0004117 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004117 definition "A monostratified retinal ganglion cell with large soma and large dendritic field ."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004117 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004117
CL_0004117 EquivalentTo retinal ganglion cell and (has part some (cell body and (bearer of some increased size))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0004119 `http://purl.obolibrary.org/obo/CL_0004119`

Added

CL_0004119 id "CL:0004119"^^string
CL_0004119 label "retinal ganglion cell B1"^^string
CL_0004119 has_obo_namespace "cell"^^string
CL_0004119 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004119 definition "A retinal ganglion cell B that has medium body size, medium dendritic field and dense dendritic arbor, and has post synaptic terminals in S2."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004119 database_cross_reference "BAMS:1047"^^string
CL_0004119 has_exact_synonym "retinal ganglion cell B4"^^string
CL_0004119 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004119 comment "Could not distingush between B1 and B4 from paper."^^string
- database_cross_reference "PMID:12209831"^^string
Class: CL_0004119
CL_0004119 EquivalentTo CL_0004115 and (has part some (cell body and (bearer of some normal size))) and (has part some (dendritic tree and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (normal and dendritic field size)) and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004119 SubClassOf CL_0004115

CL_0004120 `http://purl.obolibrary.org/obo/CL_0004120`

Added

CL_0004120 has_exact_synonym "I-2"^^string
CL_0004120 database_cross_reference "BAMS:1045"^^string
CL_0004120 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004120 has_obo_namespace "cell"^^string
CL_0004120 has_exact_synonym "inner alpha retinal ganglion cell"^^string
CL_0004120 has_broad_synonym "type I"^^string
CL_0004120 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004120 label "retinal ganglion cell A1"^^string
CL_0004120 definition "A retinal ganglion A cell found in the retina with large somata, often polygonal in shape. The dendritic fields consist of three to seven stout dendrites that are sparce near soma. Dendrites terminate in S4."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004120 id "CL:0004120"^^string
Class: CL_0004120
CL_0004120 EquivalentTo CL_0004117 and (has part some (dendritic tree and (bearer of some sparse))) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004120 SubClassOf CL_0004117

CL_0004121 `http://purl.obolibrary.org/obo/CL_0004121`

Added

CL_0004121 has_obo_namespace "cell"^^string
CL_0004121 definition "A retinal ganglion cell B that has a very small but very dense dendritic field, and has post synaptic terminals in S2."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004121 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004121 database_cross_reference "BAMS:1048"^^string
CL_0004121 label "retinal ganglion cell B2"^^string
CL_0004121 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004121 id "CL:0004121"^^string
Class: CL_0004121
CL_0004121 EquivalentTo CL_0004115 and (has part some (cell body and (bearer of some normal size))) and (has part some (dendritic tree and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (dendritic field size and (decreased in magnitude relative to some normal))) and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004121 SubClassOf CL_0004115

CL_0004124 `http://purl.obolibrary.org/obo/CL_0004124`

Added

CL_0004124 definition "A retinal ganglion cell C inner that has medium dendritic diversity."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004124 label "retinal ganglion cell C1"^^string
CL_0004124 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004124 id "CL:0004124"^^string
CL_0004124 has_obo_namespace "cell"^^string
CL_0004124 has_related_synonym "ON-direction-selective"^^string
CL_0004124 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004124 has_related_synonym "MTN projecting"^^string
CL_0004124 database_cross_reference "BAMS:1050"^^string
CL_0004124 has_related_synonym "delta"^^string
Class: CL_0004124
CL_0004124 EquivalentTo CL_0003024 and (has part some (dendritic tree and (bearer of some (area density and (has modifier some normal))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0004125 `http://purl.obolibrary.org/obo/CL_0004125`

Added

CL_0004125 id "CL:0004125"^^string
CL_0004125 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004125 label "retinal ganglion cell C2 inner"^^string
CL_0004125 definition "A retinal ganglion cell C inner that has dense dendritic diversity."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004125 has_obo_namespace "cell"^^string
CL_0004125 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004125 database_cross_reference "BAMS:1067"^^string
Class: CL_0004125
CL_0004125 EquivalentTo CL_0003024 and (has part some (dendritic tree and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0004126 `http://purl.obolibrary.org/obo/CL_0004126`

Added

CL_0004126 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004126 definition "A retinal ganglion cell C outer that has dense dendritic diversity."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004126 has_obo_namespace "cell"^^string
CL_0004126 label "retinal ganglion cell C2 outer"^^string
CL_0004126 database_cross_reference "BAMS:1066"^^string
CL_0004126 id "CL:0004126"^^string
CL_0004126 contributor "https://orcid.org/0000-0001-7258-9596"
Class: CL_0004126
CL_0004126 EquivalentTo CL_0003020 and (has part some (dendritic tree and (bearer of some symmetrical) and (bearer of some (area density and (has modifier some dense))))) and (bearer of some (dendritic field size and (increased in magnitude relative to some normal)))

CL_0004137 `http://purl.obolibrary.org/obo/CL_0004137`

Added

CL_0004137 has_obo_namespace "cell"^^string
CL_0004137 id "CL:0004137"^^string
CL_0004137 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004137 label "retinal ganglion cell A2 inner"^^string
CL_0004137 database_cross_reference "BAMS:1061"^^string
CL_0004137 definition "A retinal ganglion A2 cell with dendrites terminating in S4"^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004137 contributor "https://orcid.org/0000-0002-5260-9315"
Class: CL_0004137
CL_0004137 EquivalentTo CL_0004138 and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004137 SubClassOf CL_0004138

CL_0004138 `http://purl.obolibrary.org/obo/CL_0004138`

Added

CL_0004138 label "retinal ganglion cell A2"^^string
CL_0004138 has_exact_synonym "outer alpha retinal ganglion cell"^^string
CL_0004138 id "CL:0004138"^^string
CL_0004138 has_broad_synonym "type I"^^string
CL_0004138 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004138 definition "A retinal ganglion A cell with dense arbor near soma."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004138 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004138 has_obo_namespace "cell"^^string
CL_0004138 has_exact_synonym "I-1"^^string
Class: CL_0004138
CL_0004138 EquivalentTo CL_0004117 and (has part some (dendritic tree and (bearer of some normal)))
CL_0004138 SubClassOf CL_0004117

CL_0004139 `http://purl.obolibrary.org/obo/CL_0004139`

Added

CL_0004139 has_obo_namespace "cell"^^string
CL_0004139 id "CL:0004139"^^string
CL_0004139 definition "A retinal ganglion A2 cell with dendrites terminating in S2."^^string
- database_cross_reference "PMID:12209831"^^string
CL_0004139 label "retinal ganglion cell A2 outer"^^string
CL_0004139 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004139 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004139 database_cross_reference "BAMS:1065"^^string
Class: CL_0004139
CL_0004139 EquivalentTo CL_0004138 and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004139 SubClassOf CL_0004138

CL_0004161 `http://purl.obolibrary.org/obo/CL_0004161`

Added

CL_0004161 database_cross_reference "BAMS:1028"^^string
- label "MB"^^string
CL_0004161 definition "A cone whose sensitivity measurements have an average spectral peak of 510 nm. Described in rat."^^string
CL_0004161 id "CL:0004161"^^string
CL_0004161 has_obo_namespace "cell"^^string
CL_0004161 label "510 nm-cone"^^string
Class: CL_0004161
CL_0004161 SubClassOf CL_0003049

CL_0004162 `http://purl.obolibrary.org/obo/CL_0004162`

Added

CL_0004162 definition "A cone whose sensitivity measurements have an average spectral peak of 358.2 nm. Described in rat."^^string
CL_0004162 has_obo_namespace "cell"^^string
CL_0004162 label "360 nm-cone"^^string
CL_0004162 id "CL:0004162"^^string
CL_0004162 database_cross_reference "BAMS:1029"^^string
- label "MB"^^string
CL_0004162 comment "The photopigment curves that provide best fits to...sensitivity measurements have an average spectral peak of 358.2 nm."^^string
Class: CL_0004162
CL_0004162 SubClassOf CL_0003051

CL_0004183 `http://purl.obolibrary.org/obo/CL_0004183`

Added

CL_0004183 contributor "https://orcid.org/0000-0002-5260-9315"
CL_0004183 definition "A monostratified retinal ganglion cell with small to medium soma and small to medium dendritic field."^^string
CL_0004183 database_cross_reference "BAMS:1049"^^string
CL_0004183 id "CL:0004183"^^string
CL_0004183 comment "Sixty to eight neurons with small somata (12 to 24 micrometers in diameter), small dendritic fields (99 to 289 micrometers in diameter), and small axonal diameters (04. to 07. micrometers in diameter) make up Group RGB. We classified cells with a large soma and a large dendritic field as RGA, cells with a small to medium to sized soma and a small to medium to sized dendritic field as RGB, and cells with a small to medium to sized soma but a medium to large dendritic field RGC."^^string
CL_0004183 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004183 has_obo_namespace "cell"^^string
CL_0004183 label "retinal ganglion cell B3"^^string
Class: CL_0004183
CL_0004183 EquivalentTo CL_0004115 and (has part some (cell body and (bearer of some normal size))) and (has part some (dendritic tree and (bearer of some (area density and (has modifier some sparse))))) and (bearer of some (normal and dendritic field size))
CL_0004183 SubClassOf CL_0004115

CL_0004213 `http://purl.obolibrary.org/obo/CL_0004213`

Added

CL_0004213 has_obo_namespace "cell"^^string
CL_0004213 label "type 3a cone bipolar cell"^^string
CL_0004213 id "CL:0004213"^^string
CL_0004213 definition "A type of type 3 cone bipolar cell with distinctive curly dendrites."^^string
Class: CL_0004213
CL_0004213 EquivalentTo type 3 cone bipolar cell (sensu Mus) and (has quality some CP_0001051)
CL_0004213 SubClassOf type 3 cone bipolar cell (sensu Mus)

CL_0004214 `http://purl.obolibrary.org/obo/CL_0004214`

Added

CL_0004214 has_obo_namespace "cell"^^string
CL_0004214 definition "A type of type 3 cone bipolar cell with distinctive crescent-shaped dendrites."^^string
CL_0004214 id "CL:0004214"^^string
CL_0004214 label "type 3b cone bipolar cell"^^string
Class: CL_0004214
CL_0004214 EquivalentTo type 3 cone bipolar cell (sensu Mus) and (has quality some CP_0001052)
CL_0004214 SubClassOf type 3 cone bipolar cell (sensu Mus)

CL_0004215 `http://purl.obolibrary.org/obo/CL_0004215`

Added

CL_0004215 label "type 5a cone bipolar cell"^^string
CL_0004215 id "CL:0004215"^^string
CL_0004215 definition "A type 5 cone bipolar cell with narrowly stratified post synaptic terminals."^^string
CL_0004215 has_obo_namespace "cell"^^string
Class: CL_0004215
CL_0004215 EquivalentTo type 5 cone bipolar cell (sensu Mus) and (has quality some CP_0001049)
CL_0004215 SubClassOf type 5 cone bipolar cell (sensu Mus)

CL_0004216 `http://purl.obolibrary.org/obo/CL_0004216`

Added

CL_0004216 id "CL:0004216"^^string
CL_0004216 label "type 5b cone bipolar cell"^^string
CL_0004216 definition "A type 5 cone bipolar cell with diffuse axonal branches."^^string
CL_0004216 has_obo_namespace "cell"^^string
Class: CL_0004216
CL_0004216 EquivalentTo type 5 cone bipolar cell (sensu Mus) and (has quality some CP_0001050)
CL_0004216 SubClassOf type 5 cone bipolar cell (sensu Mus)

CL_0004217 `http://purl.obolibrary.org/obo/CL_0004217`

Added

CL_0004217 has_exact_synonym "A Horizontal Cell"^^string
CL_0004217 has_obo_namespace "cell"^^string
CL_0004217 label "H1 Horizontal Cell"^^string
CL_0004217 id "CL:0004217"^^string
CL_0004217 definition "A horizontal cell with a large cell body, thick dendrites, and a large dendritic arbor."^^string
Class: CL_0004217
CL_0004217 EquivalentTo retina horizontal cell and (has quality some CP_0000100) and (has quality some CP_0001063) and (has quality some CP_0001080) and (lacks_part some axon)
CL_0004217 SubClassOf retina horizontal cell

CL_0004218 `http://purl.obolibrary.org/obo/CL_0004218`

Added

CL_0004218 definition "A horizontal cell with a small cell body, thin dendrites, and small dendritic arbor."^^string
CL_0004218 id "CL:0004218"^^string
CL_0004218 has_exact_synonym "B Horizontal Cell"^^string
CL_0004218 label "H2 Horizontal Cell"^^string
CL_0004218 has_obo_namespace "cell"^^string
Class: CL_0004218
CL_0004218 EquivalentTo retina horizontal cell and (has quality some CP_0000102) and (has quality some CP_0001081) and (synapsed to some cone cell pedicle)
CL_0004218 SubClassOf retina horizontal cell

CL_0004219 `http://purl.obolibrary.org/obo/CL_0004219`

Added

CL_0004219 definition "A bistratifed retinal amacrine cell with a small dendritic field, dendrite stratification in S1-S2, and a second dendrite stratification in S5."^^string
CL_0004219 label "A2 amacrine Cell"^^string
CL_0004219 has_obo_namespace "cell"^^string
CL_0004219 id "CL:0004219"^^string
Class: CL_0004219
CL_0004219 EquivalentTo CL_0004250 and (has quality some CP_0000107) and (has postsynaptic terminal in some sublaminar layer S5) and (has postsynaptic terminal in some sublaminar layers S1 or S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004219 SubClassOf CL_0004250

CL_0004220 `http://purl.obolibrary.org/obo/CL_0004220`

Added

CL_0004220 label "flag amacrine Cell"^^string
CL_0004220 id "CL:0004220"^^string
CL_0004220 definition "An amacrine cell with a small, assymteric dendritic field."^^string
CL_0004220 has_obo_namespace "cell"^^string
Class: CL_0004220
CL_0004220 EquivalentTo retina horizontal cell and (has quality some CP_0001086)
CL_0004220 SubClassOf retina horizontal cell

CL_0004221 `http://purl.obolibrary.org/obo/CL_0004221`

Added

CL_0004221 id "CL:0004221"^^string
CL_0004221 has_obo_namespace "cell"^^string
CL_0004221 definition "A flag amacrine cell with post-synaptic terminals in S2 and S3."^^string
CL_0004221 label "flag A amacrine Cell"^^string
Class: CL_0004221
CL_0004221 EquivalentTo CL_0004220 and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004221 SubClassOf CL_0004220

CL_0004222 `http://purl.obolibrary.org/obo/CL_0004222`

Added

CL_0004222 id "CL:0004222"^^string
CL_0004222 has_obo_namespace "cell"^^string
CL_0004222 label "flag B amacrine cell"^^string
CL_0004222 definition "A flag amacrine cell with post-synaptic terminals in S3, S4, and S5."^^string
Class: CL_0004222
CL_0004222 EquivalentTo CL_0004220 and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (has postsynaptic terminal in some sublaminar layer S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2)
CL_0004222 SubClassOf CL_0004220

CL_0004223 `http://purl.obolibrary.org/obo/CL_0004223`

Added

CL_0004223 id "CL:0004223"^^string
CL_0004223 has_obo_namespace "cell"^^string
CL_0004223 label "AB diffuse-1 amacrine cell"^^string
CL_0004223 definition "A amacrine cell with a small dendritic field and post-synaptic terminals in S1, S2, S3, and S4. AB diffuse-1 amacrine cells have a tent-shaped dendritic arbor and undulate dendrites."^^string
Class: CL_0004223
CL_0004223 EquivalentTo retina horizontal cell and (has quality some CP_0001082) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004223 SubClassOf retina horizontal cell

CL_0004224 `http://purl.obolibrary.org/obo/CL_0004224`

Added

CL_0004224 id "CL:0004224"^^string
CL_0004224 has_obo_namespace "cell"^^string
CL_0004224 definition "A broadly stratifying amacrine cell that has a small dendritic field and post-synaptic terminals in S2 and S3."^^string
CL_0004224 label "AB diffuse-2 amacrine cell"^^string
Class: CL_0004224
CL_0004224 EquivalentTo CL_0004251 and (has quality some CP_0001066) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004224 SubClassOf CL_0004251

CL_0004225 `http://purl.obolibrary.org/obo/CL_0004225`

Added

CL_0004225 definition "A broadly stratifying amacrine cell with a small dendritic field, straight dendrites and post-synaptic terminals in S1, S2, and S3."^^string
CL_0004225 id "CL:0004225"^^string
CL_0004225 label "spider amacrine cell"^^string
CL_0004225 has_obo_namespace "cell"^^string
Class: CL_0004225
CL_0004225 EquivalentTo CL_0004251 and (has quality some CP_0001083) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004225 SubClassOf CL_0004251

CL_0004226 `http://purl.obolibrary.org/obo/CL_0004226`

Added

CL_0004226 label "monostratified amacrine cell"^^string
CL_0004226 id "CL:0004226"^^string
CL_0004226 has_obo_namespace "cell"^^string
CL_0004226 definition "An amacrine cell with a small dendritic field with post-synaptic terminals in S3 and S4."^^string
Class: CL_0004226
CL_0004226 EquivalentTo retina horizontal cell and (has quality some CP_0000107) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004226 SubClassOf retina horizontal cell
CL_0004226 SubClassOf CL_0004246

CL_0004227 `http://purl.obolibrary.org/obo/CL_0004227`

Added

CL_0004227 label "flat bistratified amacrine cell"^^string
CL_0004227 has_obo_namespace "cell"^^string
CL_0004227 definition "A bistratified amacrine cell with a small dendritic field. Flat bistratified amacrine cells have post-synaptic terminals both on the border of S1 and S2, and on the border of S3 and S4."^^string
CL_0004227 id "CL:0004227"^^string
Class: CL_0004227
CL_0004227 EquivalentTo CL_0004250 and (has quality some CP_0000107) and (has postsynaptic terminal in some border of sublaminar layers S1 and S2) and (has postsynaptic terminal in some border of sublaminar layers S3 and S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004227 SubClassOf CL_0004250

CL_0004228 `http://purl.obolibrary.org/obo/CL_0004228`

Added

CL_0004228 has_obo_namespace "cell"^^string
CL_0004228 definition "An amacrine cell with a small dendritic field that has post-synaptic terminals in S1, S2, S3, and S4."^^string
CL_0004228 label "broad diffuse amacrine cell"^^string
CL_0004228 id "CL:0004228"^^string
Class: CL_0004228
CL_0004228 EquivalentTo retina horizontal cell and (has quality some CP_0001084) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004228 SubClassOf retina horizontal cell

CL_0004229 `http://purl.obolibrary.org/obo/CL_0004229`

Added

CL_0004229 id "CL:0004229"^^string
CL_0004229 has_obo_namespace "cell"^^string
CL_0004229 definition "A bistratified amacrine cell with a small dendritic field that has dendrite stratification in S2, and in S3 and S4."^^string
CL_0004229 label "A2-like amacrine cell"^^string
Class: CL_0004229
CL_0004229 EquivalentTo CL_0004250 and (has quality some CP_0000107) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layers S3 or S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004229 SubClassOf CL_0004250

CL_0004230 `http://purl.obolibrary.org/obo/CL_0004230`

Added

CL_0004230 definition "A bistratified amacrine cell with a small dendritic field that has post-synaptic terminals in S1 and the border of S1-S2, and termination of a second arbor within the border of S2-S3 and S3."^^string
CL_0004230 id "CL:0004230"^^string
CL_0004230 label "diffuse bistratified amacrine cell"^^string
CL_0004230 has_obo_namespace "cell"^^string
Class: CL_0004230
CL_0004230 EquivalentTo CL_0004250 and (has quality some CP_0000107) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some border of sublaminar layers S1 and S2) and (has postsynaptic terminal in some border of sublaminar layers S2 and S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004230 SubClassOf CL_0004250

CL_0004231 `http://purl.obolibrary.org/obo/CL_0004231`

Added

CL_0004231 label "recurving diffuse amacrine cell"^^string
CL_0004231 id "CL:0004231"^^string
CL_0004231 definition "A broadly stratifying amacrine cell with a small dendritic field and a complex dendritic arbor. Recurving diffuse amacrine cells have post-synaptic terminals in S2, S3, and S4."^^string
CL_0004231 has_obo_namespace "cell"^^string
Class: CL_0004231
CL_0004231 EquivalentTo CL_0004251 and (has quality some CP_0001084) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004231 SubClassOf CL_0004251

CL_0004232 `http://purl.obolibrary.org/obo/CL_0004232`

Added

CL_0004232 label "starburst amacrine cell"^^string
CL_0004232 definition "An amacrine cell with a flat dendritic arbor and a medium dendritic field. Starburst amacrine cells have post-synaptic terminals in S2."^^string
CL_0004232 has_obo_namespace "cell"^^string
CL_0004232 id "CL:0004232"^^string
Class: CL_0004232
CL_0004232 EquivalentTo retina horizontal cell and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004232 SubClassOf retina horizontal cell

CL_0004233 `http://purl.obolibrary.org/obo/CL_0004233`

Added

CL_0004233 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals that stratify at S2, with a second stratification that occurs in S3 and S4."^^string
CL_0004233 id "CL:0004233"^^string
CL_0004233 label "DAPI-3 amacrine cell"^^string
CL_0004233 has_obo_namespace "cell"^^string
Class: CL_0004233
CL_0004233 EquivalentTo CL_0004250 and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layers S3 or S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004233 SubClassOf CL_0004250

CL_0004234 `http://purl.obolibrary.org/obo/CL_0004234`

Added

CL_0004234 has_obo_namespace "cell"^^string
CL_0004234 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals in S2, and in S3-S4."^^string
CL_0004234 id "CL:0004234"^^string
CL_0004234 label "diffuse multistratified amacrine cell"^^string
Class: CL_0004234
CL_0004234 EquivalentTo retina horizontal cell and (has quality some CP_0001068) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layers S3 or S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004234 SubClassOf retina horizontal cell

CL_0004235 `http://purl.obolibrary.org/obo/CL_0004235`

Added

CL_0004235 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals in S2 and S3."^^string
CL_0004235 id "CL:0004235"^^string
CL_0004235 label "AB broad diffuse-1 amacrine cell"^^string
CL_0004235 has_obo_namespace "cell"^^string
Class: CL_0004235
CL_0004235 EquivalentTo retina horizontal cell and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004235 SubClassOf retina horizontal cell

CL_0004236 `http://purl.obolibrary.org/obo/CL_0004236`

Added

CL_0004236 has_obo_namespace "cell"^^string
CL_0004236 id "CL:0004236"^^string
CL_0004236 label "AB broad diffuse-2 amacrine cell"^^string
CL_0004236 definition "An amacrine cell with a medium dendritic field and post-synaptic terminals in S2, S3, and S4."^^string
Class: CL_0004236
CL_0004236 EquivalentTo retina horizontal cell and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004236 SubClassOf retina horizontal cell

CL_0004237 `http://purl.obolibrary.org/obo/CL_0004237`

Added

CL_0004237 definition "A retinal amacrine cell with a medium dendritic field and post-synaptic terminals in S1, S2, S3, and S4."^^string
CL_0004237 has_obo_namespace "cell"^^string
CL_0004237 id "CL:0004237"^^string
CL_0004237 label "fountain amacrine cell"^^string
Class: CL_0004237
CL_0004237 EquivalentTo retina horizontal cell and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S3) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004237 SubClassOf retina horizontal cell

CL_0004238 `http://purl.obolibrary.org/obo/CL_0004238`

Added

CL_0004238 definition "A bistratified amacrine cell with a medium dendritic field, a flat and sparse dendritic arbor, and post-synaptic terminals at the intersections of S1 and S2, and S3 and S4."^^string
CL_0004238 has_obo_namespace "cell"^^string
CL_0004238 id "CL:0004238"^^string
CL_0004238 label "asymmetric bistratified amacrine cell"^^string
Class: CL_0004238
CL_0004238 EquivalentTo CL_0004250 and (has quality some CP_0000121) and (has quality some CP_0001068) and (has postsynaptic terminal in some border of sublaminar layers S1 and S2) and (has postsynaptic terminal in some border of sublaminar layers S3 and S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004238 SubClassOf CL_0004250

CL_0004239 `http://purl.obolibrary.org/obo/CL_0004239`

Added

CL_0004239 label "wavy bistratified amacrine cell"^^string
CL_0004239 has_obo_namespace "cell"^^string
CL_0004239 id "CL:0004239"^^string
CL_0004239 definition "A bistratified amacrine cell with a medium dendritic field and post-synaptic terminals in S1-S2, and S4."^^string
Class: CL_0004239
CL_0004239 EquivalentTo CL_0004250 and (has quality some CP_0000106) and (has postsynaptic terminal in some sublaminar layer S1) and (has postsynaptic terminal in some sublaminar layer S2) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004239 SubClassOf CL_0004250

CL_0004240 `http://purl.obolibrary.org/obo/CL_0004240`

Added

CL_0004240 id "CL:0004240"^^string
CL_0004240 definition "An amacrine cell with a wide dendritic field, dendrites in S1, and post-synaptic terminals in S1."^^string
CL_0004240 has_obo_namespace "cell"^^string
CL_0004240 label "WF1 amacrine cell"^^string
Class: CL_0004240
CL_0004240 EquivalentTo retina horizontal cell and (part_of some sublaminar layer S1) and (has part some CP_0001085) and (has quality some CP_0000105) and (has postsynaptic terminal in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004240 SubClassOf retina horizontal cell

CL_0004241 `http://purl.obolibrary.org/obo/CL_0004241`

Added

CL_0004241 label "WF2 amacrine cell"^^string
CL_0004241 definition "An amacrine cell with a wide dendritic field, dendrites in S2, and post-synaptic terminals in S1."^^string
CL_0004241 id "CL:0004241"^^string
CL_0004241 has_obo_namespace "cell"^^string
Class: CL_0004241
CL_0004241 EquivalentTo retina horizontal cell and (part_of some sublaminar layer S2) and (has part some CP_0001085) and (has quality some CP_0000105) and (has postsynaptic terminal in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004241 SubClassOf retina horizontal cell

CL_0004242 `http://purl.obolibrary.org/obo/CL_0004242`

Added

CL_0004242 definition "An amacrine cell with a wide dendritic field, dendrites in S3, and post-synaptic terminals in S3. Dendrites of this cell type are straight and minimally branched."^^string
CL_0004242 label "WF3-1 amacrine cell"^^string
CL_0004242 has_obo_namespace "cell"^^string
CL_0004242 id "CL:0004242"^^string
Class: CL_0004242
CL_0004242 EquivalentTo retina horizontal cell and (part_of some sublaminar layer S3) and (has part some CP_0001085) and (has quality some CP_0000105) and (has quality some CP_0001059) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004242 SubClassOf retina horizontal cell

CL_0004243 `http://purl.obolibrary.org/obo/CL_0004243`

Added

CL_0004243 label "WF3-2 amacrine cell"^^string
CL_0004243 has_obo_namespace "cell"^^string
CL_0004243 id "CL:0004243"^^string
CL_0004243 definition "An amacrine cell with a wild dendritic field, dendrites in S3, and post-synaptic terminals in S3. Dendrites have spikes, cross over each other, and cover a larger volume than dendrties of W3-1 retinal amacrine cells."^^string
Class: CL_0004243
CL_0004243 EquivalentTo retina horizontal cell and (part_of some sublaminar layer S3) and (has part some CP_0001085) and (has quality some CP_0000105) and (has quality some CP_0001060) and (has postsynaptic terminal in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004243 SubClassOf retina horizontal cell

CL_0004244 `http://purl.obolibrary.org/obo/CL_0004244`

Added

CL_0004244 label "WF4 amacrine cell"^^string
CL_0004244 id "CL:0004244"^^string
CL_0004244 definition "An amacrine cell with a wide dendritic field, dendrites in S4, and post-synaptic terminals in S4."^^string
CL_0004244 has_obo_namespace "cell"^^string
Class: CL_0004244
CL_0004244 EquivalentTo retina horizontal cell and (part_of some sublaminar layer S4) and (has part some CP_0001085) and (has quality some CP_0000105) and (has postsynaptic terminal in some sublaminar layer S4) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S5)
CL_0004244 SubClassOf retina horizontal cell

CL_0004245 `http://purl.obolibrary.org/obo/CL_0004245`

Added

CL_0004245 has_obo_namespace "cell"^^string
CL_0004245 definition "An amacrine cell with a wide dendritic field and post-synaptic terminals in S5."^^string
CL_0004245 label "indoleamine-accumulating amacrine cell"^^string
CL_0004245 id "CL:0004245"^^string
Class: CL_0004245
CL_0004245 EquivalentTo retina horizontal cell and (has quality some CP_0000105) and (has postsynaptic terminal in some sublaminar layer S5) and (lacks_post_synaptic_terminals_in some sublaminar layer S1) and (lacks_post_synaptic_terminals_in some sublaminar layer S2) and (lacks_post_synaptic_terminals_in some sublaminar layer S3) and (lacks_post_synaptic_terminals_in some sublaminar layer S4)
CL_0004245 SubClassOf retina horizontal cell

CL_0004246 `http://purl.obolibrary.org/obo/CL_0004246`

Added

CL_0004246 definition "A central nervous neuron that stratifies at one and only one location."^^string
CL_0004246 id "CL:0004246"^^string
CL_0004246 has_obo_namespace "cell"^^string
CL_0004246 label "monostratified cell"^^string
Class: CL_0004246
CL_0004246 EquivalentTo CNS neuron (sensu Vertebrata) and (has part some CP_0001085) and (has quality some unilateral)
CL_0004246 SubClassOf CNS neuron (sensu Vertebrata)

CL_0004247 `http://purl.obolibrary.org/obo/CL_0004247`

Added

CL_0004247 label "bistratified cell"^^string
CL_0004247 id "CL:0004247"^^string
CL_0004247 contributor "https://orcid.org/0000-0001-7258-9596"
CL_0004247 definition "A neuron that stratifies dendrites at two and only two locations."^^string
- database_cross_reference "https://orcid.org/0000-0002-5260-9315"^^string
- database_cross_reference "PMID:9620701"^^string
CL_0004247 has_obo_namespace "cell"^^string
Class: CL_0004247
CL_0004247 EquivalentTo neuron and (bearer of some bistratified dendrite cell morphology)

CL_0004250 `http://purl.obolibrary.org/obo/CL_0004250`

Added

CL_0004250 definition "An amicrine that stratifies dendrites at two and only two locations."^^string
CL_0004250 label "bistratified retinal amacrine cell"^^string
CL_0004250 id "CL:0004250"^^string
CL_0004250 has_obo_namespace "cell"^^string
Class: CL_0004250
CL_0004250 SubClassOf CL_0004247
CL_0004250 SubClassOf retina horizontal cell

CL_0004251 `http://purl.obolibrary.org/obo/CL_0004251`

Added

CL_0004251 has_obo_namespace "cell"^^string
CL_0004251 definition "An amicrine that stratifies dendrites at two and only two locations."^^string
CL_0004251 id "CL:0004251"^^string
CL_0004251 label "narrow field retinal amacrine cell"^^string
Class: CL_0004251
CL_0004251 EquivalentTo retina horizontal cell and (has quality some CP_0000107)
CL_0004251 SubClassOf retina horizontal cell

CL_0004252 `http://purl.obolibrary.org/obo/CL_0004252`

Added

CL_0004252 id "CL:0004252"^^string
CL_0004252 label "medium field retinal amacrine cell"^^string
CL_0004252 has_obo_namespace "cell"^^string
CL_0004252 definition "An amicrine that stratifies dendrites at two and only two locations."^^string
Class: CL_0004252
CL_0004252 EquivalentTo retina horizontal cell and (has quality some CP_0000106)
CL_0004252 SubClassOf retina horizontal cell

CL_0004253 `http://purl.obolibrary.org/obo/CL_0004253`

Added

CL_0004253 label "wide field retinal amacrine cell"^^string
CL_0004253 id "CL:0004253"^^string
CL_0004253 has_obo_namespace "cell"^^string
CL_0004253 definition "An amicrine that stratifies dendrites at two and only two locations."^^string
Class: CL_0004253
CL_0004253 EquivalentTo retina horizontal cell and (has quality some CP_0000105)
CL_0004253 SubClassOf retina horizontal cell

CP_0000100 `http://purl.obolibrary.org/obo/CP_0000100`

Added

Class: CP_0000100

CP_0000101 `http://purl.obolibrary.org/obo/CP_0000101`

Added

Class: CP_0000101

CP_0000102 `http://purl.obolibrary.org/obo/CP_0000102`

Added

Class: CP_0000102

CP_0000103 `http://purl.obolibrary.org/obo/CP_0000103`

Added

Class: CP_0000103

CP_0000105 `http://purl.obolibrary.org/obo/CP_0000105`

Added

Class: CP_0000105

CP_0000106 `http://purl.obolibrary.org/obo/CP_0000106`

Added

Class: CP_0000106

CP_0000107 `http://purl.obolibrary.org/obo/CP_0000107`

Added

Class: CP_0000107

CP_0000108 `http://purl.obolibrary.org/obo/CP_0000108`

Added

Class: CP_0000108

CP_0000109 `http://purl.obolibrary.org/obo/CP_0000109`

Added

Class: CP_0000109

CP_0000111 `http://purl.obolibrary.org/obo/CP_0000111`

Added

Class: CP_0000111

CP_0000121 `http://purl.obolibrary.org/obo/CP_0000121`

Added

Class: CP_0000121

CP_0001049 `http://purl.obolibrary.org/obo/CP_0001049`

Added

Class: CP_0001049

CP_0001050 `http://purl.obolibrary.org/obo/CP_0001050`

Added

Class: CP_0001050

CP_0001051 `http://purl.obolibrary.org/obo/CP_0001051`

Added

Class: CP_0001051

CP_0001052 `http://purl.obolibrary.org/obo/CP_0001052`

Added

Class: CP_0001052

CP_0001059 `http://purl.obolibrary.org/obo/CP_0001059`

Added

Class: CP_0001059

CP_0001060 `http://purl.obolibrary.org/obo/CP_0001060`

Added

Class: CP_0001060

CP_0001062 `http://purl.obolibrary.org/obo/CP_0001062`

Added

Class: CP_0001062

CP_0001063 `http://purl.obolibrary.org/obo/CP_0001063`

Added

Class: CP_0001063

CP_0001064 `http://purl.obolibrary.org/obo/CP_0001064`

Added

Class: CP_0001064

CP_0001065 `http://purl.obolibrary.org/obo/CP_0001065`

Added

Class: CP_0001065

CP_0001066 `http://purl.obolibrary.org/obo/CP_0001066`

Added

Class: CP_0001066

CP_0001067 `http://purl.obolibrary.org/obo/CP_0001067`

Added

Class: CP_0001067

CP_0001068 `http://purl.obolibrary.org/obo/CP_0001068`

Added

Class: CP_0001068

CP_0001069 `http://purl.obolibrary.org/obo/CP_0001069`

Added

Class: CP_0001069

CP_0001070 `http://purl.obolibrary.org/obo/CP_0001070`

Added

Class: CP_0001070

CP_0001072 `http://purl.obolibrary.org/obo/CP_0001072`

Added

Class: CP_0001072

CP_0001073 `http://purl.obolibrary.org/obo/CP_0001073`

Added

Class: CP_0001073

CP_0001074 `http://purl.obolibrary.org/obo/CP_0001074`

Added

Class: CP_0001074

CP_0001076 `http://purl.obolibrary.org/obo/CP_0001076`

Added

Class: CP_0001076

CP_0001077 `http://purl.obolibrary.org/obo/CP_0001077`

Added

Class: CP_0001077

CP_0001078 `http://purl.obolibrary.org/obo/CP_0001078`

Added

Class: CP_0001078

CP_0001079 `http://purl.obolibrary.org/obo/CP_0001079`

Added

Class: CP_0001079

CP_0001080 `http://purl.obolibrary.org/obo/CP_0001080`

Added

Class: CP_0001080

CP_0001081 `http://purl.obolibrary.org/obo/CP_0001081`

Added

Class: CP_0001081

CP_0001082 `http://purl.obolibrary.org/obo/CP_0001082`

Added

Class: CP_0001082

CP_0001083 `http://purl.obolibrary.org/obo/CP_0001083`

Added

Class: CP_0001083

CP_0001084 `http://purl.obolibrary.org/obo/CP_0001084`

Added

Class: CP_0001084

CP_0001085 `http://purl.obolibrary.org/obo/CP_0001085`

Added

Class: CP_0001085

CP_0001086 `http://purl.obolibrary.org/obo/CP_0001086`

Added

Class: CP_0001086

PR_000001224 `http://purl.obolibrary.org/obo/PR_000001224`

Added

Class: PR_000001224

PR_000001243 `http://purl.obolibrary.org/obo/PR_000001243`

Added

Class: PR_000001243

PR_000001244 `http://purl.obolibrary.org/obo/PR_000001244`

Added

Class: PR_000001244

bestrophin-4 (human) `http://purl.obolibrary.org/obo/PR_Q8NFU0`

Added

Class: bestrophin-4 (human)

lacks_post_synaptic_terminals_in `http://purl.obolibrary.org/obo/cl#lacks_post_synaptic_terminals_in`

Added

lacks_post_synaptic_terminals_in label "lacks_post_synaptic_terminals_in"^^string
ObjectProperty: lacks_post_synaptic_terminals_in

retina horizontal cell `http://purl.obolibrary.org/obo/CL_0000745`

Removed

retina horizontal cell definition "A neuron that laterally connects other neurons in the inner nuclear layer of the retina."^^string
- database_cross_reference "ISBN:0195088433"^^string

Added

retina horizontal cell has_obo_namespace "cell"^^string
retina horizontal cell creation_date "2010-08-11T01:45:26Z"^^string
retina horizontal cell database_cross_reference "BAMS:1113"^^string
retina horizontal cell definition "A neuron that laterally connects other neurons in the inner nuclear layer of the retina. Retina horizontal cells have dendrites which run tangential to or parallel with the surface of the colliculus. Most horizontal cells have fusiform cell bodies, about 10 micrometers in diameter, lying within 250 micrometers of the surface."^^string
- database_cross_reference "ISBN:0195088433"^^string
retina horizontal cell id "CL:0004045"^^string
retina horizontal cell database_cross_reference "BAMS:973"^^string
retina horizontal cell SubClassOf CL_0004001

retinal bipolar neuron `http://purl.obolibrary.org/obo/CL_0000748`

Removed

retinal bipolar neuron definition "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer."^^string
- database_cross_reference "PMID:14689473"^^string

Added

retinal bipolar neuron has_obo_namespace "cell"^^string
retinal bipolar neuron id "CL:0004077"^^string
retinal bipolar neuron definition "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. Retinal bipolar neurons have dendritic processes that terminate in or about the outer plexiform layers, where they make contact with photoreceptors, and with axonal processes that terminate in or about the inner plexiform layer."^^string
- database_cross_reference "PMID:14689473"^^string
retinal bipolar neuron database_cross_reference "BAMS:972"^^string
retinal bipolar neuron label "retinal bipolar cell"^^string
retinal bipolar neuron SubClassOf synapsed to some photoreceptor cell
retinal bipolar neuron SubClassOf CL_0004001
retinal bipolar neuron SubClassOf has postsynaptic terminal in some outer plexiform layer of retina
retinal bipolar neuron SubClassOf has presynaptic terminal in some inner plexiform layer of retina

Nov 04 '22 17:11 github-actions[bot]

[DRAFT] Adding Retinal Cell Types from RCL

bistratified retinal ganglion cell SubClassOf Nothing

G3 retinal ganglion cell SubClassOf Nothing

retinal ganglion cell D2 SubClassOf Nothing

retinal ganglion cell D1 SubClassOf Nothing

G7 retinal ganglion cell SubClassOf Nothing

M13 retinal ganglion cell SubClassOf Nothing

M12 retinal ganglion cell SubClassOf Nothing

M14 retinal ganglion cell SubClassOf Nothing

M11 retinal ganglion cell SubClassOf Nothing

A2 amacrine Cell SubClassOf Nothing

Axiom Impact

Axioms used 10 times

Axioms used 9 times

Axioms used 1 times

Ontologies used:

Ontology comparison

Left

Right

Ontology imports

Ontology annotations

CL_0003001 http://purl.obolibrary.org/obo/CL_0003001

Added

CL_0003002 http://purl.obolibrary.org/obo/CL_0003002

Added

CL_0003003 http://purl.obolibrary.org/obo/CL_0003003

Added

CL_0003004 http://purl.obolibrary.org/obo/CL_0003004

Added

CL_0003005 http://purl.obolibrary.org/obo/CL_0003005

Added

CL_0003006 http://purl.obolibrary.org/obo/CL_0003006

Added

CL_0003007 http://purl.obolibrary.org/obo/CL_0003007

Added

CL_0003008 http://purl.obolibrary.org/obo/CL_0003008

Added

CL_0003009 http://purl.obolibrary.org/obo/CL_0003009

Added

CL_0003010 http://purl.obolibrary.org/obo/CL_0003010

Added

CL_0003011 http://purl.obolibrary.org/obo/CL_0003011

Added

CL_0003012 http://purl.obolibrary.org/obo/CL_0003012

Added

CL_0003013 http://purl.obolibrary.org/obo/CL_0003013

Added

CL_0003014 http://purl.obolibrary.org/obo/CL_0003014

Added

CL_0003015 http://purl.obolibrary.org/obo/CL_0003015

Added

CL_0003016 http://purl.obolibrary.org/obo/CL_0003016

Added

CL_0003017 http://purl.obolibrary.org/obo/CL_0003017

Added

CL_0003018 http://purl.obolibrary.org/obo/CL_0003018

Added

CL_0003020 http://purl.obolibrary.org/obo/CL_0003020

Added

CL_0003021 http://purl.obolibrary.org/obo/CL_0003021

Added

CL_0003022 http://purl.obolibrary.org/obo/CL_0003022

Added

CL_0003023 http://purl.obolibrary.org/obo/CL_0003023

Added

CL_0003024 http://purl.obolibrary.org/obo/CL_0003024

Added

CL_0003025 http://purl.obolibrary.org/obo/CL_0003025

Added

CL_0003026 http://purl.obolibrary.org/obo/CL_0003026

Added

CL_0003027 http://purl.obolibrary.org/obo/CL_0003027

Added

CL_0003028 http://purl.obolibrary.org/obo/CL_0003028

Added

CL_0003029 http://purl.obolibrary.org/obo/CL_0003029

Added

CL_0003030 http://purl.obolibrary.org/obo/CL_0003030

Added

CL_0003031 http://purl.obolibrary.org/obo/CL_0003031

CL_0003001 `http://purl.obolibrary.org/obo/CL_0003001`

CL_0003002 `http://purl.obolibrary.org/obo/CL_0003002`

CL_0003003 `http://purl.obolibrary.org/obo/CL_0003003`

CL_0003004 `http://purl.obolibrary.org/obo/CL_0003004`

CL_0003005 `http://purl.obolibrary.org/obo/CL_0003005`

CL_0003006 `http://purl.obolibrary.org/obo/CL_0003006`

CL_0003007 `http://purl.obolibrary.org/obo/CL_0003007`

CL_0003008 `http://purl.obolibrary.org/obo/CL_0003008`

CL_0003009 `http://purl.obolibrary.org/obo/CL_0003009`

CL_0003010 `http://purl.obolibrary.org/obo/CL_0003010`

CL_0003011 `http://purl.obolibrary.org/obo/CL_0003011`

CL_0003012 `http://purl.obolibrary.org/obo/CL_0003012`

CL_0003013 `http://purl.obolibrary.org/obo/CL_0003013`

CL_0003014 `http://purl.obolibrary.org/obo/CL_0003014`

CL_0003015 `http://purl.obolibrary.org/obo/CL_0003015`

CL_0003016 `http://purl.obolibrary.org/obo/CL_0003016`

CL_0003017 `http://purl.obolibrary.org/obo/CL_0003017`

CL_0003018 `http://purl.obolibrary.org/obo/CL_0003018`

CL_0003020 `http://purl.obolibrary.org/obo/CL_0003020`

CL_0003021 `http://purl.obolibrary.org/obo/CL_0003021`

CL_0003022 `http://purl.obolibrary.org/obo/CL_0003022`

CL_0003023 `http://purl.obolibrary.org/obo/CL_0003023`

CL_0003024 `http://purl.obolibrary.org/obo/CL_0003024`

CL_0003025 `http://purl.obolibrary.org/obo/CL_0003025`

CL_0003026 `http://purl.obolibrary.org/obo/CL_0003026`

CL_0003027 `http://purl.obolibrary.org/obo/CL_0003027`

CL_0003028 `http://purl.obolibrary.org/obo/CL_0003028`

CL_0003029 `http://purl.obolibrary.org/obo/CL_0003029`

CL_0003030 `http://purl.obolibrary.org/obo/CL_0003030`

CL_0003031 `http://purl.obolibrary.org/obo/CL_0003031`

CL_0003032 `http://purl.obolibrary.org/obo/CL_0003032`

CL_0003033 `http://purl.obolibrary.org/obo/CL_0003033`

CL_0003034 `http://purl.obolibrary.org/obo/CL_0003034`

CL_0003035 `http://purl.obolibrary.org/obo/CL_0003035`

CL_0003036 `http://purl.obolibrary.org/obo/CL_0003036`

CL_0003037 `http://purl.obolibrary.org/obo/CL_0003037`

CL_0003038 `http://purl.obolibrary.org/obo/CL_0003038`

CL_0003039 `http://purl.obolibrary.org/obo/CL_0003039`

CL_0003040 `http://purl.obolibrary.org/obo/CL_0003040`

CL_0003041 `http://purl.obolibrary.org/obo/CL_0003041`

CL_0003042 `http://purl.obolibrary.org/obo/CL_0003042`

CL_0003043 `http://purl.obolibrary.org/obo/CL_0003043`

CL_0003044 `http://purl.obolibrary.org/obo/CL_0003044`

CL_0003045 `http://purl.obolibrary.org/obo/CL_0003045`

CL_0003046 `http://purl.obolibrary.org/obo/CL_0003046`

CL_0003047 `http://purl.obolibrary.org/obo/CL_0003047`

CL_0003048 `http://purl.obolibrary.org/obo/CL_0003048`

CL_0003049 `http://purl.obolibrary.org/obo/CL_0003049`

CL_0003050 `http://purl.obolibrary.org/obo/CL_0003050`

CL_0003051 `http://purl.obolibrary.org/obo/CL_0003051`

CL_0004001 `http://purl.obolibrary.org/obo/CL_0004001`

CL_0004115 `http://purl.obolibrary.org/obo/CL_0004115`

CL_0004116 `http://purl.obolibrary.org/obo/CL_0004116`

CL_0004117 `http://purl.obolibrary.org/obo/CL_0004117`

CL_0004119 `http://purl.obolibrary.org/obo/CL_0004119`

CL_0004120 `http://purl.obolibrary.org/obo/CL_0004120`

CL_0004121 `http://purl.obolibrary.org/obo/CL_0004121`

CL_0004124 `http://purl.obolibrary.org/obo/CL_0004124`

CL_0004125 `http://purl.obolibrary.org/obo/CL_0004125`

CL_0004126 `http://purl.obolibrary.org/obo/CL_0004126`

CL_0004137 `http://purl.obolibrary.org/obo/CL_0004137`

CL_0004138 `http://purl.obolibrary.org/obo/CL_0004138`

CL_0004139 `http://purl.obolibrary.org/obo/CL_0004139`

CL_0004161 `http://purl.obolibrary.org/obo/CL_0004161`

CL_0004162 `http://purl.obolibrary.org/obo/CL_0004162`