cell-ontology icon indicating copy to clipboard operation
cell-ontology copied to clipboard

mapping NPO to CL

Open shawntanzk opened this issue 3 years ago • 3 comments

Not sure if mapping needs to be done in PATO? Need to figure out how? SSSOM? Related to https://github.com/obophenotype/cell-ontology/issues/1657

shawntanzk avatar Jul 21 '22 10:07 shawntanzk

NPO is basically cell type/classes (even if they get called cell phenotypes)

dosumis avatar Jul 21 '22 13:07 dosumis

I vaguely rmbr there being morphology and electrophys terms in there? or was that just cell types with those properties

shawntanzk avatar Jul 21 '22 13:07 shawntanzk

Both (but bulk of terms are cell types). I think Tom said he was happy to give on on his morphology terms and use PATO. Not sure he has though, so might be worth building mapping.

dosumis avatar Jul 22 '22 07:07 dosumis

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

github-actions[bot] avatar Jan 19 '23 02:01 github-actions[bot]

I can help with this if there is still interest.

patrick-lloyd-ray avatar Jan 19 '23 17:01 patrick-lloyd-ray

@patrick-lloyd-ray - will assign this to you, not sure how to move forward with this, but I think its defs worth doing

shawntanzk avatar Jan 26 '23 11:01 shawntanzk

Thanks, @shawntanzk. Tom and I had a discussion this fall about doing this, so I'll reach out to him and we will form a plan.

patrick-lloyd-ray avatar Jan 26 '23 18:01 patrick-lloyd-ray

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

github-actions[bot] avatar Jul 26 '23 02:07 github-actions[bot]