Add draft pattern for bone length along an axis

[meghalithic]

pattern_name: bone_length_axis

pattern_iri:

description: "A bone length trait that is the line along an axis of a bone."

contributors:

• https://orcid.org/0000-0002-7073-9172 # David Osumi-Sutherland
• https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik
• https://orcid.org/0000-0002-7356-1779 # Nicolas Matentzoglu
• https://orcid.org/0000-0003-2699-3066 # Meghan A. Balk

classes: skeletal_element: UBERON:0004765 anatomical_entity: UBERON:0001062 length: PATO:0000122 line: BFO:0000026 # one-dimensional spatial region physical_object_quality: PATO:0001241 anatomical_axis: 'BSPO:0000010'

relations: characterishtic_of: RO:0000052 follows_axis: 'BSPO:0015002' #part_of: BFO:0000050

annotationProperties: exact_synonym: oio:hasExactSynonym related_synonym: oio:hasRelatedSynonym xref: oio:hasDbXref measured_in_taxon not_measured_in_tax

vars: bone: 'skeletal element' axis: 'anatomical_axis'

name: text: "%s length" vars:

• bone
• axis

def: text: "The length of a %s along the %s" vars:

• bone
• axis

annotations: - annotationProperty: related_synonym text: %s length %s vars: - bone - axis - annotatioProperty: xref text: "FOVT:%s"

logical_axioms: - axiom_type: subClassOf text: "length" and 'characteristic of' some %s" vars: - bone - axom_type: subClassOf text: "line that follows some %s and ('characteristic of' some %s)" vars: - axis - bone

[rays22]

Hi @megbalk, I have created a PR (#81) to add the yaml template file for this DOSDP pattern.

[meghalithic]

While @helenamachado and I were playing around with these axioms, we realized the two subclasses should be (based on General class axioms for "line connecting laterally paired nipples" in OBA):

'part of' some (length and ('characteristic of' some BONE))

length and ('characteristic of' some ('anatomical line' that 'follows axis' some 'AXIS' and ('characteristic of' some BONE)))

@rays22 does it matter if it is "line" (BFO) or "anatomical line" (UBERON)?

[matentzn]

Anatomical line makes sense!

[meghalithic]

I am confusing myself on 'part of' and 'characteristic of' in: 'anatomical line' that 'follows axis' some 'AXIS' and ('characteristic of' OR 'part of some BONE))