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Published 20 hours ago • verified publisher icon obophenotype

Document GCI patterns for inferring part parents

Open cmungall opened this issue 2 years ago • 0 comments

In OBA it is frequently desirable to infer part-parents

e.g. morphology-of-nose subClassOf part-of morphology-of-head

We use a GCI mechanism for this that is not well documented

The GCIs are inserted automatically by DOSDP:

https://github.com/obophenotype/bio-attribute-ontology/blob/079cf5c5b43bda379a0bb00f24b7e4c879e1153b/src/patterns/dosdp-patterns/entity_attribute.yaml#L59-L68

the GCIs are not sufficient in and of themselves. A standard robot reason will not insert the links.

Instead it's necessary to run materialize:

https://github.com/obophenotype/bio-attribute-ontology/blob/079cf5c5b43bda379a0bb00f24b7e4c879e1153b/src/ontology/oba.Makefile#L22

cmungall avatar Mar 21 '22 20:03 cmungall