bio-attribute-ontology

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Fixes #313. This PR ensures that we never release OBA again with subclass of cycles (as a consequence of relaxing owl:equivalentClasses). Depends on - [x] https://github.com/obophenotype/bio-attribute-ontology/pull/331 @rays22 can you take...

matentzn

Added 'response to' terms

2

- issue https://github.com/EBISPOT/efo/issues/2195

ar-ibrahim

Add ratio related patterns and examples

16

1. The purpose of pattern template `compound_attributes` is to extend PATO with compound qualities, i.e. qualities that are defined by using primitive (I mean existing PATO) qualities. The two-component quality...

rays22

If applied, this commit will fix #323.

rays22

Add 89 traits related to APO

1

This issue is part of the work that is needed to fix https://github.com/obophenotype/upheno/issues/928 . ### Add the following classes to OBA: object_id | object_label | entity | entity_label | quality...

rays22

Create an OBA-HP mapping

souzadevinicius

Edit some of the high level hierarchy classes in OBA

1

Edit the following [high level hierarchy classes](https://www.ebi.ac.uk/ols4/ontologies/oba/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOBA_0000001?lang=en) in to biologically meaningful groups: - [ ] OBA:2020000 age of onset of disease - [ ] OBA:0003870 aging onset quality - [...

rays22

Import the following dangling ChEBI entities: 

rays22

Need pattern for "ratio" traits

1

Example: https://www.ebi.ac.uk/gwas/efotraits/EFO_0009884 "urinary sodium to potassium ratio" This will be a quite impactful class of problems to solve @dosumis @rays22

matentzn

PR:000000001 and protein (CHEBI:36080) has cyclic dependency

1

Hi there, PR:000000001 and protein (CHEBI:36080) has cyclic dependency suggest removing the subclass relation. Thanks Gabby

gabbysantos