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obi-ontology
The Ontology for Biomedical Investigations
Right now, there is no linkage between immunohistochemistry ( OBI:0001986 - child of immuno staining assay) and histological assay (OBI:0600020). We think histological assay should be a primary parent of...
**interpretation of clinical variant protocol** Label: interpretation of clinical variant protocol Definition: a protocol that describes the process of assigning a formal classification of the clinical significance of the sequence...
Hello, As part of the the gEAR project at the Institute for Genome Sciences (IGS) we are requesting some device terms for DNA sequencers and arrays. Here is the link...
Hi OBI, We would like to request a new term 'synaptosome preparation process' for which the provisional OBI id has been registered in the registry. The details are: Name: 'synaptosome...
**artificially induced biological process** * Parent: 'material processing' * Definition: A material processing protocol in which a naturally-occurring biological process is artificially induced. **artificially induced depolarization** * Parent: 'artificially induced...
* Parent: 'planned process' * Definition: A planned process that disrupts the function of a biological system through external or internal means. [doi:10.1007/978-1-4419-9863-7] * Other (potential) axioms: * `'has participant'...
This was raised by @cmungall in response to PR #1474, which led to issues #1475 and #1476. For OBI, I think that if the reasoner finds that two named classes...
Currently, if you want to update the label of a term, you need to check for all its usages in templates. It would be useful to have a script that...
The [`assay-violation-edit.rq`](https://github.com/obi-ontology/obi/blob/master/src/sparql/assay-violation-edit.rq) check is supposed to prevent us from adding assays to `obi-edit.owl` -- they should go in `assays.tsv` or a more specific template such as `epitope-assays.tsv`. But #1071 and...
This switches the import workflow to use [Gizmos](https://github.com/ontodev/gizmos). This is using a version of `gizmos` in a branch here: https://github.com/ontodev/gizmos/pull/79