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NTR: sample collection - type of sample

Open cmrn-rhi opened this issue 2 years ago • 0 comments

Type of Sample Terms

  • ROBOT table new term requests (`sample collection template)
  • GenEpiO ID (temporary) and Curation Notes annotations are for curation work and should be removed prior to ROBOT integration.
  • Most terms need a FINAL review and to be entered into OBI.
  • Optional terms haven't undergone initial review.

ROBOT table URL (I#1582 tab sample-collection template): https://docs.google.com/spreadsheets/d/1SiVgFDy9jOoFIhywvLjYLMBLqJsZ0B9An9170RYpQRM/edit#gid=553810270&range=A3

ontology ID label
OBI:0002815 food production sample
OBI:0002836 liquid food production sample
OBI:0002837 in-process food production sample
  amniocentesis
  medical aspiration
OBI:0002893 suprapubic aspiration
OBI:0002894 tracheal aspiration
OBI:0002895 vacuum aspiration
OBI:0002896 air filtration
OBI:0003439 gastric lavage
OBI:0003440 nasal lavage
OBI:0003441 transtracheal lavage
OBI:0003442 rinsing
  lumbar puncture
  necropsy
  phlebotomy
OBI:0003443 saline gargle
OBI:0003444 scraping
  swabbing
OBI:0003445 finger prick
OBI:0003446 washout tear collection
OBI:0003447 thoracentesis
OBI:0003448 messenger RNA extract
OBI:0003449 virus passage
OBI:0003450 post RT-PCR RNA re-extraction

@ddooley

cmrn-rhi avatar Aug 10 '22 20:08 cmrn-rhi