Conpair
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nygenome
Concordance and contamination estimator for tumor–normal pairs
Hi! We are using Conpair as part of a pipeline for a large project to ensure that samples from the same patient are properly paired. The tool is working well...
Hi On my previous server, I was able to run Conpair with GATK3.8 but now, on my new server, my java is not compatible with GATK3.8. So I am trying...
Hi, Thank you for an awesome tool. Great that have a replacement for Contest and VerifyBAMID. My question is whether you had a chance to test it with GATK 4....
Hi On my previous server, I was able to run Conpair with GATK3.8 but now, on my new server, my java is not compatible with GATK3.8. So I am trying...
Hi! Conpair, Can I use this tool to identify what is normal or what is tumor in paired-sample? (e.g **mislabel**) Thank you in advance!
Dear professor: I wrote to you due to issues about conpair. when I run command: ~/software/conpair/Conpair/scripts/verify_concordance.py -T SCA_078_T.conpair.pileup -N SCA_078_N.conpair.pileup --markers ~/software/conpair/Conpair/data/markers/GRCh38.autosomes.phase3_shapeit2_mvncall_integrated.20130502.SNV.genotype.sselect_v4_MAF_0.4_LD_0.8.liftover.txt one error happened: Traceback (most recent call last):...
Hi there, Is Conpair compatible with analysis with the rn6 rat genome? It looks like I just need to provide a reference genome and generate a markers file, is this...
Hello. Where can I get or How I can create the markers for the genome GRCh38 ?
Hi, would be great if this could be Conda-ised, appreciate there may be reasons not to and thank you for writing it in the first case! Bruce
