Nastassia Patin comments

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                                            Nastassia Patin

Does fastp remove primer sequences for aplicon sequencing results?

Hopefully bumping this question because I would also like to know the answer!

bam_generator] Failed to correctly find or parse BAM file at "/tmp/coverm_fifo.wyqhN9T2ujOl/foo.pipe"

Hi, was this issue ever solved? I am getting the same error but only for one file out of several hundred that were successful.

[ERROR coverm::bam_generator] The STDERR for the minimap2 part

Hi, was this issue ever resolved? I'm getting the same error trying to map interleaved reads to a contigs fasta. According to the log file, the BAM files are successfully...

[ERROR coverm::bam_generator] The STDERR for the minimap2 part

Thanks for the quick response. I think it's because I ran out of temporary storage space during the mapping process. I removed the --bam-file-cache-directory parameter and it worked fine, but...

Discrepancy between metadata search results & piped fetch results

Update: I see that the list of samples found in the metadata search and the list of samples in the downloaded biom table do match, but the biom table seems...

Discrepancy between metadata search results & piped fetch results

Thank you @wasade that's very helpful! I will check back for future functionality that provides contexts associated with samples in the metadata search results.