Nastassia Patin

On a similar note: is it possible to use input from a binning process that used two different assemblies? MaxBin2 and others can take advantage of differential coverage across multiple...

Thanks for the quick response! Here is the output of 'conda env export': name: qiime2-2022.2 channels: - qiime2/label/r2022.2 - conda-forge - bioconda - defaults dependencies: - _r-mutex=1.0.1=anacondar_1 - aioeasywebdav=2.4.0=py38h50d1736_1001 -...

I resolved this problem by changing my parameters for --p-min-feature-count and --p-min-sample-count in QIIME2 (I changed both to 1). I'm not sure how it could be resolved in the standalone...

Hi again, I am getting another segmentation fault after I increased the size of my data set. Once again it occurs with both the standalone and QIIME2 plug-in for DEICODE....

I did as you suggested. My min(feature_count) is 1 and my min(sample_count) is 121.

Are there ways to modify the default parameters in the standalone DEICODE command? I know how to do it in QIIME2 but I would like to try similar modifications in...

Thanks for this information. I was able to run it on a cluster with --min-feature-frequency 40, which is higher than I would like but will be ok for now. If...

To follow up on this puzzle: I thought the problem might be that one set of samples (~1/3 of the whole data set) are extremely sparse in their composition, with...

Ok, so would you agree that is probably the original source of the problem? Seems like I may need to transform the data somehow (maybe just add a count of...

I got an error when I tried to input primers with degenerate bases into fastp. From what I can tell the program only supports A,T,C, and G for the adapter...