Parser doesn't start until re-installed

[ilexite]

trafficstars

Describe the bug

When I open a file in NeoVim, treesitter starts but does not highlight code. Example: However, after I run :TSInstall javascript, and confirm to re-install the parser, everything works fine:

To Reproduce

1. nvim test.js
2. notice the lack of highlighting

Expected behavior

I expect treesitter to automatically highlight my code.

Output of :checkhealth nvim-treesitter

nvim-treesitter: require("nvim-treesitter.health").check()
========================================================================
## Installation
  - WARNING: `tree-sitter` executable not found (parser generator, only needed for :TSInstallFromGrammar, not required for :TSInstall)
  - OK: `node` found v14.17.6 (only needed for :TSInstallFromGrammar)
  - OK: `git` executable found.
  - OK: `cc` executable found. Selected from { vim.NIL, "cc", "gcc", "clang", "cl", "zig" }
    Version: cc (Gentoo 11.2.1_p20220115 p4) 11.2.1 20220115
  - OK: Neovim was compiled with tree-sitter runtime ABI version 14 (required >=13). Parsers must be compatible with runtime ABI.

## Parser/Features H L F I J
  - elm            ✓ . . . ✓ 
  - beancount      x . x . . 
  - python         ✓ ✓ ✓ ✓ ✓ 
  - sparql         ✓ ✓ ✓ ✓ ✓ 
  - comment        ✓ . . . . 
  - elvish         ✓ . . . ✓ 
  - lua            ✓ ✓ ✓ ✓ ✓ 
  - ocaml          ✓ ✓ ✓ . ✓ 
  - go             ✓ ✓ ✓ ✓ ✓ 
  - haskell        ✓ . ✓ . ✓ 
  - glsl           ✓ ✓ ✓ ✓ ✓ 
  - fusion         ✓ ✓ ✓ ✓ . 
  - pug            ✓ . . . ✓ 
  - ledger         ✓ . ✓ ✓ ✓ 
  - markdown       ✓ . ✓ . ✓ 
  - clojure        ✓ ✓ ✓ . ✓ 
  - supercollider  ✓ ✓ ✓ ✓ ✓ 
  - hack           ✓ . . . . 
  - proto          ✓ . ✓ . . 
  - heex           ✓ ✓ ✓ ✓ ✓ 
  - m68k           ✓ ✓ ✓ . ✓ 
  - typescript     ✓ ✓ ✓ ✓ ✓ 
  - wgsl           ✓ . ✓ . . 
  - help           ✓ . . . . 
  - jsonc          ✓ ✓ ✓ ✓ ✓ 
  - embedded_template✓ . . . ✓ 
  - jsdoc          ✓ . . . . 
  - cooklang       ✓ . . . . 
  - solidity       ✓ . . . . 
  - dot            ✓ . . . ✓ 
  - vala           ✓ . . . . 
  - query          ✓ ✓ ✓ ✓ ✓ 
  - norg           . . . . . 
  - cpp            ✓ ✓ ✓ ✓ ✓ 
  - bash           ✓ ✓ ✓ . ✓ 
  - ocaml_interface✓ ✓ ✓ . ✓ 
  - vue            ✓ . ✓ ✓ ✓ 
  - llvm           ✓ . . . . 
  - slint          ✓ . . ✓ . 
  - prisma         ✓ . . . . 
  - latex          ✓ . ✓ . ✓ 
  - http           ✓ . . . ✓ 
  - make           ✓ . . . ✓ 
  - rst            ✓ ✓ . . ✓ 
  - css            ✓ . ✓ ✓ ✓ 
  - glimmer        ✓ . . . . 
  - erlang         ✓ . ✓ . . 
  - gowork         ✓ . . . ✓ 
  - lalrpop        ✓ ✓ . . . 
  - regex          ✓ . . . . 
  - pioasm         ✓ . . . ✓ 
  - json5          ✓ . . . ✓ 
  - svelte         ✓ . ✓ ✓ ✓ 
  - vim            ✓ ✓ ✓ . ✓ 
  - cmake          ✓ . ✓ . . 
  - c              ✓ ✓ ✓ ✓ ✓ 
  - fortran        ✓ . ✓ ✓ . 
  - java           ✓ ✓ . ✓ ✓ 
  - zig            ✓ . ✓ ✓ ✓ 
  - bibtex         ✓ . ✓ ✓ . 
  - rego           ✓ . . . ✓ 
  - hjson          ✓ ✓ ✓ ✓ ✓ 
  - gomod          ✓ . . . ✓ 
  - gleam          ✓ ✓ ✓ ✓ ✓ 
  - verilog        ✓ ✓ ✓ . ✓ 
  - r              ✓ ✓ . ✓ ✓ 
  - org            ✓ . . . ✓ 
  - ninja          ✓ . ✓ ✓ . 
  - gdscript       ✓ ✓ . ✓ ✓ 
  - yaml           ✓ ✓ ✓ ✓ ✓ 
  - astro          ✓ ✓ ✓ ✓ ✓ 
  - pascal         ✓ ✓ ✓ ✓ ✓ 
  - ql             ✓ ✓ . ✓ ✓ 
  - julia          ✓ ✓ ✓ ✓ ✓ 
  - fennel         ✓ ✓ . . ✓ 
  - dart           ✓ ✓ . ✓ ✓ 
  - nix            ✓ ✓ ✓ . ✓ 
  - turtle         ✓ ✓ ✓ ✓ ✓ 
  - toml           ✓ ✓ ✓ ✓ ✓ 
  - tsx            ✓ ✓ ✓ ✓ ✓ 
  - scss           ✓ . . ✓ . 
  - javascript     ✓ ✓ ✓ ✓ ✓ 
  - yang           ✓ . ✓ ✓ . 
  - hocon          ✓ . . . ✓ 
  - surface        ✓ . ✓ ✓ ✓ 
  - c_sharp        ✓ ✓ ✓ . ✓ 
  - scheme         ✓ . ✓ . ✓ 
  - eex            ✓ . . . ✓ 
  - elixir         ✓ ✓ ✓ ✓ ✓ 
  - cuda           ✓ ✓ ✓ ✓ ✓ 
  - commonlisp     ✓ ✓ ✓ . . 
  - fish           ✓ ✓ ✓ ✓ ✓ 
  - kotlin         ✓ ✓ ✓ . ✓ 
  - ruby           ✓ ✓ ✓ ✓ ✓ 
  - todotxt        ✓ . . . . 
  - scala          ✓ . ✓ . ✓ 
  - dockerfile     ✓ . . . ✓ 
  - rust           ✓ ✓ ✓ ✓ ✓ 
  - html           ✓ ✓ ✓ ✓ ✓ 
  - perl           ✓ . ✓ . . 
  - tlaplus        ✓ ✓ ✓ . ✓ 
  - json           ✓ ✓ ✓ ✓ . 
  - php            ✓ ✓ ✓ ✓ ✓ 
  - graphql        ✓ . . ✓ ✓ 
  - foam           ✓ ✓ ✓ ✓ ✓ 
  - rasi           ✓ ✓ ✓ ✓ . 
  - hcl            ✓ . ✓ ✓ ✓ 

  Legend: H[ighlight], L[ocals], F[olds], I[ndents], In[j]ections
         +) multiple parsers found, only one will be used
         x) errors found in the query, try to run :TSUpdate {lang}

## The following errors have been detected:
  - ERROR: beancount(highlights): Failed to load parser: uv_dlopen: /home/ilexite/.local/share/nvim/site/pack/packer/opt/nvim-treesitter/parser/beancount.so: undefined symbol: tree_sitter_beancount_external_scanner_create
    beancount(highlights) is concatenated from the following files:
    | [ERROR]:"/home/ilexite/.local/share/nvim/site/pack/packer/opt/nvim-treesitter/queries/beancount/highlights.scm", failed to load: Failed to load parser: uv_dlopen: /home/ilexite/.local/share/nvim/site/pack/packer/opt/nvim-treesitter/parser/beancount.so: undefined symbol: tree_sitter_beancount_external_scanner_create
  - ERROR: beancount(folds): Failed to load parser: uv_dlopen: /home/ilexite/.local/share/nvim/site/pack/packer/opt/nvim-treesitter/parser/beancount.so: undefined symbol: tree_sitter_beancount_external_scanner_create
    beancount(folds) is concatenated from the following files:
    | [ERROR]:"/home/ilexite/.local/share/nvim/site/pack/packer/opt/nvim-treesitter/queries/beancount/folds.scm", failed to load: Failed to load parser: uv_dlopen: /home/ilexite/.local/share/nvim/site/pack/packer/opt/nvim-treesitter/parser/beancount.so: undefined symbol: tree_sitter_beancount_external_scanner_create

Output of nvim --version

NVIM v0.7.0
Build type: RelWithDebInfo
LuaJIT 2.0.5
Compilation: /usr/bin/x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -DNVIM_TS_HAS_SET_MATCH_LIMIT -DNVIM_TS_HAS_SET_ALLOCATOR -Og -g -Wall -Wextra -pedantic -Wno-unused-parameter -Wstrict-prototypes -std=gnu99 -Wshadow -Wconversion -Wdouble-promotion -Wmissing-noreturn -Wmissing-format-attribute -Wmissing-prototypes -Wimplicit-fallthrough -Wsuggest-attribute=pure -Wsuggest-attribute=const -Wsuggest-attribute=malloc -Wsuggest-attribute=cold -Wvla -fstack-protector-strong -fno-common -fdiagnostics-color=always -DINCLUDE_GENERATED_DECLARATIONS -D_GNU_SOURCE -DNVIM_MSGPACK_HAS_FLOAT32 -DNVIM_UNIBI_HAS_VAR_FROM -DMIN_LOG_LEVEL=3 -I/var/tmp/portage/app-editors/neovim-0.7.0/work/neovim-0.7.0_build/config -I/var/tmp/portage/app-editors/neovim-0.7.0/work/neovim-0.7.0/src -I/usr/include -I/var/tmp/portage/app-editors/neovim-0.7.0/work/neovim-0.7.0_build/src/nvim/auto -I/var/tmp/portage/app-editors/neovim-0.7.0/work/neovim-0.7.0_build/include
Compiled by portage@localhost

Features: +acl +iconv +tui
See ":help feature-compile"

   system vimrc file: "/etc/vim/sysinit.vim"
  fall-back for $VIM: "/usr/share/nvim"

Run :checkhealth for more info

Additional context

No response

[clason]

Please share your exact nvim-treesitter config. (Also, LuaJIT 2.0.5 is ancient and not really supported.)

[ilexite]

Treesitter config:

    {
        "nvim-treesitter/nvim-treesitter",
        event = { "BufRead", "BufNewFile" },
        run = ":TSUpdate",
        config = function()
            require("nvim-treesitter.configs").setup({
                highlight = {
                    enable = true,
                    use_languagetree = true,
                    disable = { "org" },
                    additional_vim_regex_highlighting = { "org" },
                },
                indent = {
                    enable = true,
                },
            })
        end,
    },

[theHamsta]

@ilexite you ran :PackerCompile to enable the config = ... function?

[ilexite]

Yes, I ran :PackerCompile many times with no success.

[torifaye]

I am also getting this error, although oddly only for one language - elixir. I've tried uninstalling and reinstalling nvim-treesitter yet the issue persists.

output of nvim -version --

NVIM v0.7.2
Build type: Release
LuaJIT 2.1.0-beta3
Compiled by runner@fv-az164-457

Features: +acl +iconv +tui
See ":help feature-compile"

   system vimrc file: "$VIM/sysinit.vim"
  fall-back for $VIM: "/share/nvim"

Run :checkhealth for more info

config --

 use { 'nvim-treesitter/nvim-treesitter',
    run = ':TSUpdate',
    config = "require('config.treesitter')"
  }

contents of config.treesitter/init.lua --

vim.lsp.handlers['textDocument/publishDiagnostics'] = vim.lsp.with(
  vim.lsp.diagnostic.on_publish_diagnostics,
  {
    underline = true,
    virtual_text = false,
    update_in_insert = true,
  }
)

require 'nvim-treesitter.configs'.setup {
  -- A list of parser names, or "all"
  ensure_installed = "all",

  -- Install parsers synchronously (only applied to `ensure_installed`)
  sync_install = false,

  auto_install = true,

  highlight = {
    -- `false` will disable the whole extension
    enable = true,
    additional_vim_regex_highlighting = false,
  },
  autotag = {
    enable = true
  },
  rainbow = {
    enable = true,
    extended_mode = false,
    max_file_lines = nil,
  },
  autopairs = { enable = true },
  incremental_selection = {
    enable = true,
    keymaps = {
      init_selection = "gnn",
      node_incremental = "grn",
      scope_incremental = "grc",
      node_decremental = "grm",
    },
  },
  indent = {
    enable = true
  },
  textobjects = {
    enable = true,
    keymaps = {
      ["af"] = "@function.outer",
      ["if"] = "@function.inner",
      ["aC"] = "@class.outer",
      ["iC"] = "@class.inner",
      ["ac"] = "@conditional.outer",
      ["ic"] = "@conditional.inner",
      ["ae"] = "@block.outer",
      ["ie"] = "@block.inner",
      ["al"] = "@loop.outer",
      ["il"] = "@loop.inner",
      ["is"] = "@statement.inner",
      ["as"] = "@statement.outer",
      ["ad"] = "@comment.outer",
      ["am"] = "@call.outer",
      ["im"] = "@call.inner"
    }
  },
}

It was working just a few hours ago, ran :PackerSync: a little bit ago and then the issue started. Confused why it's only happening for one specific language too...

Edit: re-installing it as @ilexite mentioned fixes the issue, but it happens again as soon as i close and re-open neovim

Edit 2: Disregard, figured out it was another plugin causing an issue for me (elixir.nvim)