Nuno Agostinho

Hey @armish, that's not what I meant: I am talking about horizontal scrolling (which I think that your program doesn't support). Right now, to check upstream/downstream positions, I need to...

Hi there! I would like to know if there is a way to incorporate VCF alternate paths into an existing pangenomes GFA, VG or XG file. Given that `vg add`...

Hi @adamnovak, thanks for the heads up about `vg combine`. I am looking into this to explore how to efficiently support sets of genetic variants from VCF files with pangenome...

Hi @geng-lee, that is odd. Could you please try downloading again?

Hi @geng-lee, did you have any luck with this issue?

Dear @hegu2692, this is now possible to do with the new update: [psichomics 1.14.2](https://github.com/nuno-agostinho/psichomics/releases/tag/1.14.2). You will have to prepare a tab-separated values (TSV) file where the first column is named...

Hi @GuoLabUCSD, Yes, your assumptions are correct. The samples column refers to the number of samples containing enough junction read counts to quantify the event (by default, psichomics only uses...

Hey @herber4! Basically, you need to create a TSV file with a table containing the PSI values like so: AS Event ID | Sample-18 | Sample-03 -- | -- |...

Hello, @Lilly88! As PSI values do not follow a normal distribution, we recommend using non-parametric tests (i.e. statistical tests that don't assume any data distribution), such as a Wilcoxon test....

Hi Nick! I am very sorry for this inconsistency and thank you for pointing it out. The event ID in the top right (e.g. `A5SS_1_-_1274742_1274667_1274033_DVL1`) has the event coordinates: one...