Nikos Karaiskos comments

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                                            Nikos Karaiskos

back-porting fast cmdline re-organization from drop-dropseq into master

Yes will do! Thank you!

Bam tag histogram mrfifo

Running tests and will report soon - [ ] Tests passed!

Using checkpoints for a single workflow

Tested this and everything looks in order.

getting original cell identities with target space locations

We have a function that is still in a pull request, until we pull it to the main repo you can try to use it. See commit b9c99bb829ea33d29ad2c7bfec0c098a76790bb4.

minor bug fix

Added a basic function for mapping cluster annotations on the reconstructed tissue space.

try unloading genome before start

Tested locally by reproducing a STAR error. PR solves it.

try unloading genome before start

Tested locally & the re-running behavior is now fixed.