Daniel Nüst

Add support for renv

2

See https://www.robertmylesmcdonnell.com/content/posts/docker/ for a complete example and potentially good approach to enable a locked environment in a container with `renv`. Also: https://rstudio.github.io/renv/articles/docker.html

Generate Singularity files

1

Generate **singularity definition file** for versions > 3.x, see https://www.sylabs.io/guides/3.0/user-guide/quick_start.html#singularity-definition-files and https://www.sylabs.io/guides/3.0/user-guide/definition_files.html See also https://github.com/nuest/singularity-rstats (which could be based on `containerit`...) Paper: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459 - [ ] start with a function...

We need to move away from Travis CI, so we can also introduce an abstraction layer with `r-ci`. https://github.com/eddelbuettel/r-ci Let's see how this plays along with the system dependencies -...

See https://github.com/cole-brokamp/dep/issues/1#issuecomment-748104251

Creation of Dockerfile as part of a pipeline? Does that make sense (as an output, so that all parts of the model are packaged in an image) - do some...

https://thinkr-open.github.io/attachment/ Related to #176 #118

We should re-use the existing output parameters for the `html_document` output type, see https://github.com/o2r-project/containerit/blob/51d7b2679623492dc4e09a4baeb31affdf96b686/R/Class-Cmd.R#L163 If an R Markdown document configures the output as follows, the `toc` configuration is lost in...

This could be an alternative or addition for `sysreqs`: https://github.com/rstudio/r-system-requirements In a similar way to making the preprocess tool exchangeable (#118), the system requirements can also be choosen if this...

Add tests for remotes::install_github and remotes::install_gitlab

1

https://cran.r-project.org/web/packages/remotes/vignettes/dependencies.html Related to #114

https://github.com/hadley/requirements Related to #118