Nitesh Turaga

MCR doesn't host bioconductor images anymore

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- The launch happens using Azure container instances, but the images are launched from Dockerhub. - Making required changes in documentation - This needs to be updated on the website...

PR adds support for Bioconductor containers - restructure how dockerfiles are represented in folders - Add bioconductor_ml:devel container - test container ``` docker pull nitesh1989/bioconductor_ml:devel ``` - We cannot directly...

The `limma::lmFit()` functions seems to be very slow and not working in a parallel manner on a sister docker image, https://github.com/DataBiosphere/terra-docker/issues/210 (terra-jupyter-r) on the AnVIL. There might be a similar...

In production, use a [mirror](http://bioconductor.org/about/mirrors/mirror-how-to/) to rsync and install libraries. This saves the "download time" of packages they are being installed. http://bioconductor.org/about/mirrors/mirror-how-to/

bowtie2 index data manager fails if index already exists

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I believe the issue is caused if the genome index is already built or it handles multiple fasta files during index building. During multiple fasta file index building, if the...