Ngoc Kim Ngan Tran

Results 27 comments of Ngoc Kim Ngan Tran

This file is all the genes in network table [all_gene.csv](https://github.com/dondi/GRNsight/files/14779531/all_gene.csv) This ifile contains all the protein in the PPI table [protein.csv](https://github.com/dondi/GRNsight/files/14779544/protein.csv) This file contains all the gene in the PPI...

I met with Dondi on Wednesday to discuss a solution to this problem. We decided to create 3 duplicated gene tables for expression, network, and protein-protein interactions by creating a...

The current script is able to load everything from a fresh start but not update the database. `combine_all_genes.csv` contains the logic to combine all genes from expression, network, and protein-protein...

Here is the union gene table. [union_genes.csv](https://github.com/dondi/GRNsight/files/15000690/union_genes.csv)

I have to write scripts for updating the network and protein-protein databases, create union missing-genes and updating-gene tables, and create a file for `loader-update.py` that will update both the protein...

I did notice about "None" display name for both network and protein-protein interactions database. There might be a chance that our production database also have some value None for display...

There are some problems when I create union gene table. A lot of genes from the protein table have a `None` display name, but in the network table, the same...

I double-checked the database. The data for ppi shouldn't be updated, only the source table is updated. However, the data for GRN is updated on 3/19. It's possible that when...

#1077: Update the progress to add ERT1 to the GRN gene table. After adding ERT1 to the GRN gene table, we still can't load it in GRN. So I looked...

I wrote a doc about this issue [here]( https://docs.google.com/document/d/1FPyzRBhWCBXuiX4uBVSKZO1nQjiW9NFgqpJbgCGi6uE/edit?usp=sharing).