Nicholas Tolley
Nicholas Tolley
Copied from: https://github.com/jonescompneurolab/hnn/issues/344 Hello, I tried using pip install hnn_core and pip install hnn_core[gui] No errors when I do python -c 'import hnn_core' But when I try tutorial 01, I...
Going through the tutorials has revealed some modifications that would make using the GUI much smoother for users: - [ ] Add global smoothing and scaling option (temporarily set default...
Related to changes in #895
Currently, `BatchSimulate` and `Optimizer` require a `set_params()` function which accepts a `Network` object, and a dictionary called `param_values` which is used to update different parameter values in the network during...
Continuing from https://github.com/jonescompneurolab/hnn-core/discussions/1197, here is an attempt at adding an objective function which uses the correlation coefficient. I think for this PR to be complete I would like to establish...
As the title states, the `BatchSimulate` class does not appear on the documentation of the API: https://jonescompneurolab.github.io/hnn-core/stable/api.html This will require updating the `api.rst` file: https://github.com/jonescompneurolab/hnn-core/blob/master/doc/api.rst
Pretty easy to reproduce: 1) Click "Save network" in the GUI 2) Use `read_network_configuration()` in hnn-core to load the network in 3) Run `simulate_dipole()` without defining `n_trials` Simulation runs fine...
I think one of the biggest shortcomings of our current optimization algorithms is that they are entirely sequential (i.e. 1 simulation per epoch). Alternative algorithms draw several samples tin an...