Tamás Nepusz

> Should we then have a special Stimulus type specifically for categorical data? Yes, IMO it would be a good idea. Currently we have `VERTEX_COLORS` and `EDGE_COLORS` (probably only in...

Not sure if it's a genuine bug as the NA values should be filled before plotting, but I'm labelling it as a bug nevertheless in case we find an easy...

No, I haven't so far - I'm not that familiar with GSL and I don't know whether it would be a good fit. But I'd be happy to help if...

What parameters are you running plfit with? It seems to work for me with no command line arguments apart from the filename: ``` ../data/lifespan-seq.dat: Discrete MLE alpha = 1.72162 xmin...

`emmintrin.h` is optional; the L-BFGS optimizer will use SSE/SSE2 instructions if possible and that's why it is looking for `emmintrin.h`, but plfit is perfectly fine without it. Am I right...

I'm gonna install a minimal 32-bit Linux system on a virtual machine and check this out when I get some free time. Leaving this open for the time being so...

The line search in the L-BFGS-B optimization routine reaches its minimum step length and L-BFGS-B bails out with an error code. I have experimented with different line search backtracking algorithms...

It is also quite strange that running `plfit` through `valgrind` does not result in an error, only when `plfit` is run "alone", and only for xmin=27.

I'm not familiar with this functionality either. My gut feeling is that when `symmetric` is `false`, we are going to use both `outlist` and `inlist` (or, `eoutlist` and `einlist`) so...

The same happens on my machine now for `ctgGEM`, which is apparently [on Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/ctgGEM.html). Another example is `DART`, which was [moved to Bioconductor from CRAN](https://cran.r-project.org/web/packages/DART/index.html).