svviz2
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WARNING - SKIPPING VARIANT about INS
Hi,there is a problem about svviz2 in processing INS: svviz2.io.vcfparser - WARNING - SKIPPING VARIANT: chr1 90337 2 N TTGGAGGGAAGGACAGTCCTCTTGTCCCTCTGTCTCTTCCACACAGTTAACTGCGCT 63 PASS SUPP=1;SUPP_VEC=10;SVLEN=93;SVTYPE=INS;SVMETHOD=SURVIVOR1.0.7;CHR2=chr1;END=90410;CIPOS=0,0;CIEND=0,0;STRANDS=+-
Could you help me explain this problem? Is there a problem with the vcf format or the svviz2 can't handle INS? Your help is greatly appreciated!