Nelly Sélem

Hello Other packages has a cover script that writes de docker run instruction for you, but it canot be just the instalation, because docker is a container to run software...

Its because BiG-SCAPE has two possible instalation forms, one is with conda and another one with docker, since CORASON is not python it has not the option to use conda....

Yes, we can try, the paths would be what we must change, but it would be great to have CORASON in CONDA too.

Ok, I will try, give me some days. :) Yes we need svg from cpan, basically, all needs are in the Dockerfile of the github repo.

Hello jc, sorry, Im late with conda version, let me keep trying, you can use gbks. We can set a meeting next week and try do it togheter

Hello Curt If fact, I got good news, Now it works for conda, (not for windows). I will update the code today with a small example

Hello, here how you can use it with conda. (only tested with Rast files for now, gbk will be next step to be tried) `git clone https://github.com/nselem/corason.git ` `cd corason...

Can you show me the content of ctg2_515.query-output directory. Perhaps is the svg perl module (that I already have in my computer). Are the input files such as 501890_57.input empty...

Glad it worked for you. Next step will be to making it work directly with gbk files. I dont know how to change SVG location without affecting docker users, it...

Hello, YIf you have run CORASON gbk mode before in your laptop you can use the Corason_Rast.IDs files and the faa and txt genomes that were also generated. This files...