adpbulk
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love the package, question about the multiple categories!
HI, package works great for one condition, but for two I was getting a bug - I worked around it by manually connecting the obs columns into one
adata.obs["one_two"] = adata.obs["one"].astype(str) +"_" +adata.obs["two"].astype(str)
but maybe its something that can be done in the code if you need it? since I think that the dtype was somehow messing the multiple category function. thanks! MJ
hey @mjstrumillo - I'm sorry I'm getting back so late on this, but could you provide a minimal reproducible example of where this fails?
i.e. can you give me an example anndata where it breaks down?
thanks!