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Published 20 hours ago • verified publisher icon nloyfer

segment sites mismatch

Open chang-bwl opened this issue 3 months ago • 1 comments

Hello, I tried to split the beta (hg19) of the cell_WGBS in the paper : $ wgbstools segment --betas *beta --min_cpg 3 --max_bp 2000 -o blocks.small.bed

The following error occurred： [wt beta] WARNING: beta file size (28,587,300 sites) incomatible with current genome reference (28,217,448 sites) Invalid input argument [wt segment] ERROR: current genome reference (hg19) does not match the input beta file (GSM5652208_Coronary-Artery-Smooth-Muscle-Z00000420.beta).

How can I solve it? Thanks

chang-bwl avatar Mar 29 '24 07:03 chang-bwl