pydra
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nipype
Pydra Dataflow Engine
[trio](https://github.com/python-trio/trio) may help us simplify submitter and debugging workflows. and is quite lightweight itself.
The [SGE tests](https://github.com/nipype/pydra/blob/master/pydra/engine/tests/test_submitter.py#L388-L573) in test_submitter.py only run if the current environment has SGE available (similar to SLURM). Add a container for testing the SGE framework, so these tests can run...
Resources * Number of nodes to consume * Number of cores to consume * Memory usage * Hard and soft memory requirements * Estimated time usage * Time cutoff?
## Acknowledgment - [x] I acknowledge that this contribution will be available under the Apache 2 license. ## Types of changes - [x] Bug fix (non-breaking change which fixes an...
* Pydra version: 0.16.2 * Run the Pydra tutorial with "serial" plugin * The workflow 1 would run successfully * It raised the following error ``` --------------------------------------------------------------------------- TypeError Traceback (most...
I'm just wondering why attrs validators are disabled in `pydra.__init__.py`. I am planning to use attrs validators in my own code, so if they didn't need to be disabled globally...
What version of Pydra are you using? 0.16.2 What were you trying to do? I am running a workflow containing a task that raises an exception in some cases. What...
@jw-96 and @djarecka it would be good to discuss the implications of absolute path since it takes things outside the cache directory and may not always do what one thought...
yesterday i ran a workflow that made me think about how pydra could handle it - (shell) use dcm2niix to convert groups of dicoms - (singularity) run kwyk using singularity...
What version of Pydra are you using? 0.15 What were you trying to do? I wrote a subclass of ```ShellCommandTask``` and wanted to run it inside a Docker image by...
