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PROV activity format WIP

Open rcali21 opened this issue 3 years ago • 1 comments

Proposed format:

@id: link to output entities

Label: e.g., "Bet - Brain Extraction Tool" <--- if an interface already exists within Pydra, we can return version and info on the tool, if not, just collect the string from the cmdline?

Command: Verbose command from the command line, if supported by an interface within Pydra, return a concatenated string? (e.g., executable + args)

Parameters: Args and in file + out file? Again, if supported by an interface, simply pull these values from input_spec, otherwise, return strings from args?

AssociatedWith: Agent (Software)

Used: Link to entities (input)

Type: Need clarification here...

StartedAtTime: Start time

EndedAtTime: End time

Please let me know your thoughts.

rcali21 avatar Aug 16 '22 22:08 rcali21

Thanks, you should work on the code and create a PR. A couple if suggestions (and we can talk more today)

@id will be randomly assigned type will be taken from the task ontology that we were discussing last time

djarecka avatar Aug 17 '22 14:08 djarecka