nitransforms

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enh: outsource the apply function

2

I have joined CHUV (Lausanne, Switzerland) for a 5 month placement and am working with Oscar Esteban on this project. We worked through this problem together as an example of...

jmarabotto

https://github.com/nipy/nitransforms/blob/592f91baa6138d2f6d018d8b1768f59435f7d553/nitransforms/tests/test_base.py#L132-L133 Abstract instance. It does not make sense to save abstract data from TransformBase() to the hard disk.

jmarabotto

Problem applying h5-files from fmriprep outputs for reproduction of normalization

6

Dear Developers, currently I am aiming to reproduce the normalization steps in fmriprep (e.g. _desc-preproc_T1w.nii.gz -> 1_space-MNI152NLin6Asym_desc-preproc_T1w.nii.gz) with nitransforms. The bigger goal is to check bit-identity between fmriprep outputs and...

m-petersen

oesteban

(low priority)

oesteban

cc/ @effigies

oesteban

cc/ @effigies

oesteban

jbanusco

Write functions to output displacement fields from nitransforms to nifti for ITK/FSL/AFNI. see https://github.com/nipreps/niworkflows/pull/819#discussion_r1287485844

bpinsard

Mapping of displacement fields

3

Hello, I believe there is a bug during the mapping of deformation fields. In the .map method of the DenseFieldTransform class, I believe the locations that are mapped out-of-domain should...

jbanusco