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Installation Errors and Many Test Errors (Ubuntu 20.04.02)

Open N-Accumbens opened this issue 3 years ago • 1 comments

Summary

I followed the typical installation instructions and got some errors. I post the errors that I got for the install then the tests.

Actual behavior

Installation Errors

pip install nipype[all] gives these two errors

ERROR: black 21.5b1 has requirement click>=7.1.2, but you'll have click 7.0 which is incompatible.
ERROR: pytest-cov 2.12.0 has requirement coverage[toml]>=5.2.1, but you'll have coverage 4.5.4 which is incompatible. 

Test Errors

python -c "import nipype; nipype.test()" gives this long log of errors that I will attach. anon.nipype.test.error.log

Expected behavior

No errors, and for the tests to complete successfully.

How to replicate the behavior

Follow the pip installation instructions on here, using Ubuntu 20.04.2

pip install nipype[all]
python -c "import nipype; nipype.test()"

Script/Workflow details

Please put URL to code or code here (if not too long).

python -c "import nipype; nipype.test()"

Platform details:

{'commit_hash': '54f502940',
 'commit_source': 'installation',
 'networkx_version': '2.5.1',
 'nibabel_version': '3.2.1',
 'nipype_version': '1.6.0',
 'numpy_version': '1.20.3',
 'pkg_path': '/home/USER/.local/lib/python3.8/site-packages/nipype',
 'scipy_version': '1.6.3',
 'sys_executable': '/usr/bin/python',
 'sys_platform': 'linux',
 'sys_version': '3.8.5 (default, Jan 27 2021, 15:41:15) \n[GCC 9.3.0]',
 'traits_version': '6.2.0'}

Execution environment

Choose one

  • ~~Container [Tag: ???]~~
  • ~~My python environment inside container [Base Tag: ???]~~
  • My python environment outside container

N-Accumbens avatar May 19 '21 23:05 N-Accumbens

I've attached the installation log here using pip install --upgrade --force-reinstall nipype[all] nipype.install.log

N-Accumbens avatar May 20 '21 02:05 N-Accumbens