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Installation Errors and Many Test Errors (Ubuntu 20.04.02)
Summary
I followed the typical installation instructions and got some errors. I post the errors that I got for the install then the tests.
Actual behavior
Installation Errors
pip install nipype[all]
gives these two errors
ERROR: black 21.5b1 has requirement click>=7.1.2, but you'll have click 7.0 which is incompatible.
ERROR: pytest-cov 2.12.0 has requirement coverage[toml]>=5.2.1, but you'll have coverage 4.5.4 which is incompatible.
Test Errors
python -c "import nipype; nipype.test()"
gives this long log of errors that I will attach.
anon.nipype.test.error.log
Expected behavior
No errors, and for the tests to complete successfully.
How to replicate the behavior
Follow the pip installation instructions on here, using Ubuntu 20.04.2
pip install nipype[all]
python -c "import nipype; nipype.test()"
Script/Workflow details
Please put URL to code or code here (if not too long).
python -c "import nipype; nipype.test()"
Platform details:
{'commit_hash': '54f502940',
'commit_source': 'installation',
'networkx_version': '2.5.1',
'nibabel_version': '3.2.1',
'nipype_version': '1.6.0',
'numpy_version': '1.20.3',
'pkg_path': '/home/USER/.local/lib/python3.8/site-packages/nipype',
'scipy_version': '1.6.3',
'sys_executable': '/usr/bin/python',
'sys_platform': 'linux',
'sys_version': '3.8.5 (default, Jan 27 2021, 15:41:15) \n[GCC 9.3.0]',
'traits_version': '6.2.0'}
Execution environment
Choose one
- ~~Container [Tag: ???]~~
- ~~My python environment inside container [Base Tag: ???]~~
- My python environment outside container
I've attached the installation log here using pip install --upgrade --force-reinstall nipype[all]
nipype.install.log