nipy
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Neuroimaging in Python FMRI analysis package
.. -- rest -- .. vim:syntax=rst
.. image:: https://coveralls.io/repos/nipy/nipy/badge.png?branch=master :target: https://coveralls.io/r/nipy/nipy?branch=master
.. Following contents should be from LONG_DESCRIPTION in nipy/info.py
==== NIPY
Neuroimaging tools for Python.
The aim of NIPY is to produce a platform-independent Python environment for the analysis of functional brain imaging data using an open development model.
In NIPY we aim to:
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Provide an open source, mixed language scientific programming environment suitable for rapid development.
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Create software components in this environment to make it easy to develop tools for MRI, EEG, PET and other modalities.
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Create and maintain a wide base of developers to contribute to this platform.
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To maintain and develop this framework as a single, easily installable bundle.
NIPY is the work of many people. We list the main authors in the file
AUTHOR in the NIPY distribution, and other contributions in THANKS.
Website
Current information can always be found at the NIPY project website <http://nipy.org/nipy>_.
Mailing Lists
For questions on how to use nipy or on making code contributions, please see
the neuroimaging mailing list:
https://mail.python.org/mailman/listinfo/neuroimaging
Please report bugs at github issues:
https://github.com/nipy/nipy/issues
You can see the list of current proposed changes at:
https://github.com/nipy/nipy/pulls
Code
You can find our sources and single-click downloads:
Main repository_ on Github;- Documentation_ for all releases and current development tree;
- Download the
current development version_ as a tar/zip file; - Downloads of all
available releases_.
.. _main repository: https://github.com/nipy/nipy .. _Documentation: http://nipy.org/nipy .. _current development version: https://github.com/nipy/nipy/archive/master.zip .. _available releases: http://pypi.python.org/pypi/nipy
Tests
To run nipy's tests, you will need to install the nose_ Python testing package. If you are using Python 2.7, you will also need to install the mock_ testing package - e.g.::
pip install nose mock
Then::
python -c "import nipy; nipy.test()"
You can also run nipy's tests with the nipnost script in the tools
directory of the nipy distribution::
./tools/nipnost nipy
nipnost is a thin wrapper around the standard nosetests program that
is part of the nose package. Try nipnost --help to see a large number of
command-line options.
Installation
See the latest installation instructions_.
License
We use the 3-clause BSD license; the full license is in the file LICENSE in
the nipy distribution.
.. links: .. _python: http://python.org .. _numpy: http://numpy.scipy.org .. _scipy: http://www.scipy.org .. _sympy: http://sympy.org .. _nibabel: http://nipy.org/nibabel .. _ipython: http://ipython.org .. _matplotlib: http://matplotlib.org .. _nose: http://nose.readthedocs.org/en/latest .. _mock: https://pypi.python.org/pypi/mock .. _installation instructions: http://nipy.org/nipy/users/installation.html