nibabel
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Python package to access a cacophony of neuro-imaging file formats
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.. Following contents should be from LONG_DESCRIPTION in nibabel/info.py
======= NiBabel
Read / write access to some common neuroimaging file formats
This package provides read +/- write access to some common medical and
neuroimaging file formats, including: ANALYZE_ (plain, SPM99, SPM2 and later),
GIFTI_, NIfTI1_, NIfTI2_, CIFTI-2
, MINC1, MINC2_, AFNI BRIK/HEAD
, MGH and
ECAT_ as well as Philips PAR/REC. We can read and write FreeSurfer_ geometry,
annotation and morphometry files. There is some very limited support for
DICOM_. NiBabel is the successor of PyNIfTI_.
.. _ANALYZE: http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm .. _AFNI BRIK/HEAD: https://afni.nimh.nih.gov/pub/dist/src/README.attributes .. _NIfTI1: http://nifti.nimh.nih.gov/nifti-1/ .. _NIfTI2: http://nifti.nimh.nih.gov/nifti-2/ .. _CIFTI-2: https://www.nitrc.org/projects/cifti/ .. _MINC1: https://en.wikibooks.org/wiki/MINC/Reference/MINC1_File_Format_Reference .. _MINC2: https://en.wikibooks.org/wiki/MINC/Reference/MINC2.0_File_Format_Reference .. _PyNIfTI: http://niftilib.sourceforge.net/pynifti/ .. _GIFTI: https://www.nitrc.org/projects/gifti .. _MGH: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat .. _ECAT: http://xmedcon.sourceforge.net/Docs/Ecat .. _Freesurfer: https://surfer.nmr.mgh.harvard.edu .. _DICOM: http://medical.nema.org/
The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays.
Website
Current documentation on nibabel can always be found at the NIPY nibabel website <http://nipy.org/nibabel>
_.
Mailing Lists
Please send any questions or suggestions to the neuroimaging mailing list <https://mail.python.org/mailman/listinfo/neuroimaging>
_.
Code
Install nibabel with::
pip install nibabel
You may also be interested in:
- the
nibabel code repository
_ on Github; - documentation_ for all releases and current development tree;
- download the
current release
_ from pypi; - download
current development version
_ as a zip file; - downloads of all
available releases
_.
.. _nibabel code repository: https://github.com/nipy/nibabel .. _Documentation: http://nipy.org/nibabel .. _current release: https://pypi.python.org/pypi/nibabel .. _current development version: https://github.com/nipy/nibabel/archive/master.zip .. _available releases: https://github.com/nipy/nibabel/releases
License
Nibabel is licensed under the terms of the MIT license. Some code included with nibabel is licensed under the BSD license. Please see the COPYING file in the nibabel distribution.
Citing nibabel
Please see the available releases
_ for the release of nibabel that you are
using. Recent releases have a Zenodo_ Digital Object Identifier
_ badge at
the top of the release notes. Click on the badge for more information.
.. _zenodo: https://zenodo.org .. _Digital Object Identifier: https://en.wikipedia.org/wiki/Digital_object_identifier